Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30965
(763 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g40020.1 68417.m05666 hypothetical protein 32 0.48
At3g18810.1 68416.m02389 protein kinase family protein contains ... 31 0.63
At5g66370.1 68418.m08368 hypothetical protein similar to unknown... 31 1.1
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 31 1.1
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 31 1.1
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 30 1.5
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 30 1.9
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 2.6
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 2.6
At5g45400.1 68418.m05579 replication protein, putative similar t... 29 2.6
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 29 3.4
At3g52290.1 68416.m05747 calmodulin-binding family protein simil... 29 4.5
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 29 4.5
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 29 4.5
At5g19870.1 68418.m02363 expressed protein contains Pfam profile... 28 5.9
At4g21440.1 68417.m03099 myb family transcription factor (MYB102... 28 5.9
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 5.9
At1g60060.1 68414.m06766 expressed protein 28 7.8
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 234 IPRSCT-AIIKVPHIVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHS 410
I ++C+ +I+K+ H + HN + E+ N N QEN + S G S P+S+ +
Sbjct: 446 IGKTCSFSIMKLAHH-NHNHKHNKETSEEETKNANGGNHQENSDESGEGNS--PSSDSYL 502
Query: 411 FEGS 422
F+GS
Sbjct: 503 FKGS 506
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 31.5 bits (68), Expect = 0.63
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +3
Query: 288 NGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYR--PTSNIHSFEGSPSYSQDAAQFSEE 461
NG+N++ +G NN N N++ + GG + R P + +S SPS + A
Sbjct: 112 NGNNNNGNDNNGNNNNGNNNDNNNQNNGGGSNNRSPPPPSRNSDRNSPSPPRALAPPRSS 171
Query: 462 YAGT-PSGYNAP 494
G+ SG N P
Sbjct: 172 GGGSNSSGNNEP 183
>At5g66370.1 68418.m08368 hypothetical protein similar to unknown
protein (emb CAB62624.1)
Length = 150
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/71 (26%), Positives = 27/71 (38%)
Frame = +3
Query: 276 VTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFS 455
V G H+ H+ N YN + SY P+ N +S + P YSQ A
Sbjct: 77 VKTGGHHHHHQHHYPHEPNLHYNSDSYYGQPPSYNSYWPSDNCYSRQHPPYYSQSLAMQP 136
Query: 456 EEYAGTPSGYN 488
+ GY+
Sbjct: 137 YHHQYPYPGYS 147
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = -3
Query: 251 GTGTGYGLATCTG*GTLSFIFTG*GTGILTAIVFVILITFTGVSG 117
GTGTG G T TG GT + TG GTG T T TG +G
Sbjct: 137 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGGTG 181
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = -3
Query: 251 GTGTGYGLATCTG*GTLSFIFTG*GTGILTAIVFVILITFTGVSG 117
GTGTG G T TG GT + TG GTG T T TG +G
Sbjct: 137 GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTGTGTGTGGTG 181
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +3
Query: 297 NSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTP 476
+S ++ G + S + + P+DGG T + S GSPSY D S AG P
Sbjct: 136 SSGDSGSPGSDSGSPSA-DTGSPTDGGSYGDTTGDSGSSAGSPSYPSDDG--SGSTAGGP 192
Query: 477 SG 482
SG
Sbjct: 193 SG 194
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 288 NGHNS---HEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS 428
NGH S + +S +G ++N Y+ NH S G T + H+ S S
Sbjct: 119 NGHTSTGSNHSSGNGSRHNGYSSGSNHSSSTGSNHSSSTGSTHNNHSSGS 168
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Frame = +3
Query: 285 GNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS------YSQDAA 446
G + S SY E GQ+ P + I S++GS S Y +A
Sbjct: 149 GRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYPPPTGYGMEAV 208
Query: 447 QFSEEYAGTPSGYNAP 494
Y+G P Y P
Sbjct: 209 PPPTSYSGGPPSYGGP 224
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Frame = +3
Query: 285 GNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPS------YSQDAA 446
G + S SY E GQ+ P + I S++GS S Y +A
Sbjct: 149 GRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYPPPTGYGMEAV 208
Query: 447 QFSEEYAGTPSGYNAP 494
Y+G P Y P
Sbjct: 209 PPPTSYSGGPPSYGGP 224
>At5g45400.1 68418.m05579 replication protein, putative similar to
replication protein A 70kDa [Oryza sativa (japonica
cultivar-group)] GI:13536993; contains InterPro entry
IPR004365: OB-fold nucleic acid binding domain, PF04057:
Replication factor-A protein 1, N-terminal domain
Length = 853
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Frame = +3
Query: 294 HNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSN------IHSFEGSPSYSQDAAQFS 455
HNS +A V NS Q H SD G+ Y ++N +H+ + Y Q Q S
Sbjct: 169 HNSSDAGRYCVSANSPQPQVVHSSSDAGR-YGVSANSPQRQVVHNSPDAGRYGQ--PQVS 225
Query: 456 EEYAGTPSGY 485
+ Y GT SGY
Sbjct: 226 QRY-GTGSGY 234
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +3
Query: 363 PSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEE---YAGTPSGYN--APTYS 503
P GG ++ P+S+ SP YS + +S Y+ T GY+ +PTYS
Sbjct: 1530 PYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1581
>At3g52290.1 68416.m05747 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 430
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 378 QSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPSGYNAPT 497
QS +P + HS GS ++D F+ ++ + GY APT
Sbjct: 336 QSEQPCNRRHSTCGSIPSTRDDESFTSSFSQSVPGYMAPT 375
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 273 IVTPGNGHNSHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQF 452
I TP + HNS + ++ Y Q + S+ P S HS G S Q + F
Sbjct: 94 IPTPSSSHNSKASVSSASSSSFYFPQTSPSSCSTPSSFSPDSFSHSNTGPWSIPQPSPVF 153
Query: 453 S 455
S
Sbjct: 154 S 154
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 178 PYPVKIKERVPYPVHVAKPYPV-PVPQLLKFH 270
P+P+++ VP+P P PV P P + F+
Sbjct: 149 PFPLQLTHPVPFPAEPGSPDPVSPPPPIASFY 180
>At5g19870.1 68418.m02363 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 276
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 348 QENHEPSDGGQSYRPTSNIHSFEGS 422
Q+NH+P D P++++H+FE S
Sbjct: 71 QKNHQPFDPNDGTIPSNHLHNFEHS 95
>At4g21440.1 68417.m03099 myb family transcription factor (MYB102)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 350
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +3
Query: 384 YRPTSNIHS---FEGSPSYSQDAAQFSEEYAGTPSGYNAPTYSN 506
Y P+ N +S F PSYS + F+ TPS +PT N
Sbjct: 269 YNPSFNDYSSSNFVLDPSYSDQSFNFANSVLNTPSSSPSPTTLN 312
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 300 SHEASEDGVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYSQDAAQFSEEYAGTPS 479
+ +AS V N S + +E +EPSDG ++ P +++ + S ++ + E+ PS
Sbjct: 735 ARDASASTVANGSES-EETYEPSDGDTAHVPGTSVEAAGESKLVTRMEVEIPEKTHSDPS 793
>At1g60060.1 68414.m06766 expressed protein
Length = 386
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = +3
Query: 264 VPHIVTPGNGHNSHEASED---GVQNNSYNVQENHEPSDGGQSYRPTSNIHSFEGSPSYS 434
VP PG H A E+ QN+++ V+ N +G ++ +N +S +YS
Sbjct: 305 VPPATQPGYYPFHHSAKEEMSQEEQNDAFRVERNDLVGEGSNNHNHNNNYNSNNDIYNYS 364
Query: 435 QDAAQFSEEYAGTPSGYNAPTY 500
+ + + + G+ + Y
Sbjct: 365 NNCSNNNYDRENKIGGFLSEDY 386
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,175
Number of Sequences: 28952
Number of extensions: 386305
Number of successful extensions: 1036
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -