Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30963
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0286 - 8589736-8590857                                           29   3.0  
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           28   6.8  
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152...    27   9.0  

>02_02_0286 - 8589736-8590857
          Length = 373

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 102 SAGTSPPPMHATRSARSPRVVSEPYTAPVNNFTNL 206
           + G +PP + A  SA S  + SEP  AP  +F N+
Sbjct: 116 AVGAAPPVVPALSSAISKLLQSEPMAAPCADFPNV 150


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 110 HLPPPHARHPQRALAAS 160
           H PPP ARH +R LAA+
Sbjct: 77  HHPPPFARHGRRGLAAA 93


>01_04_0017 -
           15113479-15113580,15113950-15114117,15115011-15115229,
           15115303-15115446,15115558-15115840,15115936-15115991,
           15116067-15116216,15116299-15116385,15116463-15116498,
           15116746-15116808,15116887-15116967,15117053-15117142,
           15117349-15117426,15117510-15117731,15117788-15117835,
           15117948-15118133,15120910-15121009,15121107-15121246
          Length = 750

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 2   RDKDNPNQYNYVA 40
           RDKDNPN Y Y+A
Sbjct: 738 RDKDNPNVYRYLA 750


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,849
Number of Sequences: 37544
Number of extensions: 233231
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)