Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30963
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21011| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00022)       31   0.57 
SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06)                     29   4.0  
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_7499| Best HMM Match : zf-CCHC (HMM E-Value=0.00029)                28   7.0  
SB_4916| Best HMM Match : PspA_IM30 (HMM E-Value=3.7)                  28   7.0  

>SB_21011| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00022)
          Length = 353

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 212 NNIYVCTYYINKYKITYFTHDGITIIRFLLKSQTVPLFVLC 334
           +N++ C +Y     +T+F+H G+T  R+ L S+++    LC
Sbjct: 110 DNVFHCRFYGYDDYLTFFSHPGLTDPRYRLSSRSLSSPPLC 150


>SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06)
          Length = 932

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 499 ECCRNSYFQRLTFFSKPRKSGEKCAAKMLK 588
           +C R +Y++R T    P K G+K     LK
Sbjct: 603 QCVRETYYKRATLSVSPTKKGKKSCRNKLK 632


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 497 KLFQPLCVQWT-EV*NYSQTIGGIYYSSQRTTSALQFQ 387
           KL + +C +W  E+ N+S   GG+Y   +R    +Q Q
Sbjct: 447 KLPKSICAKWEKEIANFSDANGGVYPPFERFAKIIQGQ 484


>SB_7499| Best HMM Match : zf-CCHC (HMM E-Value=0.00029)
          Length = 846

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 497 KLFQPLCVQWT-EV*NYSQTIGGIYYSSQRTTSALQFQ 387
           KL + +C +W  E+ N+S   GG+Y   +R    +Q Q
Sbjct: 7   KLPKSICAKWEKEIANFSDANGGVYPPFERFAKIIQGQ 44


>SB_4916| Best HMM Match : PspA_IM30 (HMM E-Value=3.7)
          Length = 331

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 497 KLFQPLCVQWT-EV*NYSQTIGGIYYSSQRTTSALQFQ 387
           KL + +C +W  E+ N+S   GG+Y   +R    +Q Q
Sbjct: 214 KLPKSICAKWEKEIANFSDANGGVYPPFERFAKIIQGQ 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,157
Number of Sequences: 59808
Number of extensions: 285686
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)