Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30963
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p...    28   6.1  
U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeo...    27   8.1  
AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox ...    27   8.1  

>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical protein
            C38D9.5 protein.
          Length = 1213

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 236  YINKYKITYFTHDGITIIRFLLKSQTVPLFVLCAPL 343
            +IN+  + Y  + G++   F++K +   L ++C+ L
Sbjct: 1047 FINRMNVPYLMNSGVSYNEFVIKPEWATLRIVCSQL 1082


>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
            protein C38D9.5 protein.
          Length = 1213

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 236  YINKYKITYFTHDGITIIRFLLKSQTVPLFVLCAPL 343
            +IN+  + Y  + G++   F++K +   L ++C+ L
Sbjct: 1047 FINRMNVPYLMNSGVSYNEFVIKPEWATLRIVCSQL 1082


>U41624-2|AAF99943.2|  351|Caenorhabditis elegans C.elegans homeobox
           protein 14 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 72  KYYLFKTVIVSAGTSPPPMHATRSARSPRVVSEPYTAPVNNFTNL 206
           KYY  +T      T PPPMH T    +P V++  ++ P++  TN+
Sbjct: 296 KYYRNET----PSTDPPPMHMT----TPSVLTTNFSTPLSLSTNV 332


>AF244368-1|AAF77181.1|  351|Caenorhabditis elegans LIM homeobox
           protein CEH-14 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 72  KYYLFKTVIVSAGTSPPPMHATRSARSPRVVSEPYTAPVNNFTNL 206
           KYY  +T      T PPPMH T    +P V++  ++ P++  TN+
Sbjct: 296 KYYRNET----PSTDPPPMHMT----TPSVLTTNFSTPLSLSTNV 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,827
Number of Sequences: 27780
Number of extensions: 223547
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)