Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30963
(618 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 4.2
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 4.2
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 4.2
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.2
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 9.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 9.6
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 21 9.6
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 9.6
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 9.6
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 21 9.6
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 75 YYLFKTVIVSAGTSPPPMHATRSA 146
Y+ F+TV+ S PP+ SA
Sbjct: 168 YHQFQTVVASMDPPEPPVPTVTSA 191
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 520 SRSYDNTRNCFNRYVFSGQKYKIIHKR*GE 431
SRS+ T +C +RY S + + ++ GE
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDGE 250
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 520 SRSYDNTRNCFNRYVFSGQKYKIIHKR*GE 431
SRS+ T +C +RY S + + ++ GE
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDGE 250
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 520 SRSYDNTRNCFNRYVFSGQKYKIIHKR*GE 431
SRS+ T +C +RY S + + ++ GE
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDGE 250
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 520 SRSYDNTRNCFNRYVFSGQKYKIIHKR*GE 431
SRS+ T +C +RY S + + ++ GE
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDGE 250
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 520 SRSYDNTRNCFNRYVFSGQKYKIIHKR*GE 431
SRS+ T +C +RY S + + ++ GE
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDGE 250
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 520 SRSYDNTRNCFNRYVFSGQKYKIIHKR*GE 431
SRS+ T +C +RY S + + ++ GE
Sbjct: 221 SRSFQRTSSCHSRYEDSRHEDRNSYRNDGE 250
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 520 SRSYDNTRNCFNRY 479
SRS+ T +C +RY
Sbjct: 221 SRSFQRTSSCHSRY 234
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 520 SRSYDNTRNCFNRY 479
SRS+ T +C +RY
Sbjct: 221 SRSFQRTSSCHSRY 234
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 514 SYDNTRNCFNRY 479
+Y NT+NC N Y
Sbjct: 103 NYWNTKNCVNPY 114
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.0 bits (42), Expect = 9.6
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -2
Query: 53 WTAVTPRSCIG 21
WT TP C+G
Sbjct: 495 WTITTPAICVG 505
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.0 bits (42), Expect = 9.6
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -2
Query: 53 WTAVTPRSCIG 21
WT TP C+G
Sbjct: 548 WTITTPAICVG 558
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 21.0 bits (42), Expect = 9.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 108 GTSPPPMHATRSARSPRVVSEP 173
GT PPP+ R+ ++EP
Sbjct: 336 GTPPPPLVWRRNGADLETLNEP 357
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,981
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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