Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30963
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32250.2 68415.m03942 far-red impaired responsive protein, pu...    29   2.5  
At2g32250.1 68415.m03941 far-red impaired responsive protein, pu...    29   2.5  
At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent phos...    29   3.3  

>At2g32250.2 68415.m03942 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 805

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 74  FSLKRRRWTAVTPRSCIGSGC 12
           F  KR + TA+ PRSC  +GC
Sbjct: 89  FGTKREKATAINPRSCPKTGC 109


>At2g32250.1 68415.m03941 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 807

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 74  FSLKRRRWTAVTPRSCIGSGC 12
           F  KR + TA+ PRSC  +GC
Sbjct: 89  FGTKREKATAINPRSCPKTGC 109


>At1g09780.1 68414.m01097 2,3-biphosphoglycerate-independent
           phosphoglycerate mutase, putative /
           phosphoglyceromutase, putative strong similarity to
           SP|Q42908 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase (EC 5.4.2.1)
           (Phosphoglyceromutase) {Mesembryanthemum crystallinum};
           contains Pfam profile PF01676: Metalloenzyme superfamily
          Length = 557

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 475 THNG*NSFECCRNSYFQRLTFFSKPRKSG 561
           THNG ++F C     F  +TFF    +SG
Sbjct: 346 THNGVSTFACSETVKFGHVTFFWNGNRSG 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,108,094
Number of Sequences: 28952
Number of extensions: 192367
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)