Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30962
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    34   0.016
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    34   0.016
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    33   0.049
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    31   0.15 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.2  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   5.6  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +2

Query: 29  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKS 184
           ++RK    T++  RP +A++L+       +    P +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +2

Query: 29  AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKS 184
           ++RK    T++  RP +A++L+       +    P +  ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 47  KMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
           K  + PKR MSA+M +    RE++K++ P     ++    G+ WK +
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 35  RKKVKMTDKPKRPMSAYMLWLNSAREQIKSE--XPGLRVTEIAKKGGEIWKSMKD 193
           ++K +   +PKRP SAY L+  + R +IK         V E+ K   E W S+ +
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSE 162


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 105 ALFNHSMYADIGRFGLSVILTFFLMAKILK*FLNW 1
           A+++H  Y D+  FGL+    F +M  +   FL+W
Sbjct: 62  AVYHHVGYKDVSTFGLA--YGFLIMMSLRTCFLSW 94


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 231 SLALAAFCSHSVLSFIDFQISP 166
           +L L A C +S L+FI +QI P
Sbjct: 173 TLYLVALCYYSYLTFIGYQILP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,202
Number of Sequences: 5004
Number of extensions: 34115
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)