Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30962
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 47 1e-05
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 47 2e-05
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 46 3e-05
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 44 8e-05
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 43 2e-04
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 41 8e-04
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 39 0.003
09_01_0004 - 133130-133897 29 3.3
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 29 4.4
02_05_0080 + 25665210-25665577,25665699-25666584 29 4.4
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 28 5.8
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 28 5.8
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Frame = +2
Query: 8 KNYFKIFAIRKKV-KMTDKPKRPMSAYMLWLNSAREQIKSEXPGLR-VTEIAKKGGEIWK 181
+ +F++ + K K +KPKRP SA+ +++ R+ K + P ++ V+ I K GG+ WK
Sbjct: 16 RGWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWK 75
Query: 182 SMKD 193
SM D
Sbjct: 76 SMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Frame = +2
Query: 59 KPKRPMSAYMLWLNSAREQIKSEXPGLR-VTEIAKKGGEIWKSMKDK 196
K KRP +A+ L+++ R++ K+E P + V+ +AK+GGE WKSM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
KK K + PKR M+ +M + + R +K+ P L TEIAKK GE+W+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
KK K + PKR ++ +M + + R +K+ P L TEIAKK GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLR-VTEIAKKGGEIWKSMKDK 196
RKK + KPKRP SA+ ++++ R++ ++ P + V ++K GE W++M ++
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
+KK K KPK+PMSAY ++ R + +E V EI + GE WK+M +
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKAMSE 326
Score = 35.1 bits (77), Expect = 0.050
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 41 KVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
K K + K+P AY+LW +IK E P E++ G WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
Score = 35.1 bits (77), Expect = 0.050
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM--KDKTEW 205
++PK+P S+++L+ AR Q+ E PG+ + + WK + +K W
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAW 463
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 17 FKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLR-VTEIAKKGGEIWKSMKD 193
FK RKK KPKR ++ + +L R Q + P + V + K GE W++M D
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSD 69
Query: 194 K 196
+
Sbjct: 70 E 70
>09_01_0004 - 133130-133897
Length = 255
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 255 LQCQWRWWRRGRKEGSKTREKG 320
L+C+ RWWRR R+ G G
Sbjct: 93 LRCRERWWRRRRRTGDAAEAAG 114
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Frame = +3
Query: 255 LQCQWRWWR-----RGRKEGSKTREKG 320
LQC+ RWWR RGR G + R G
Sbjct: 21 LQCRERWWRRRPVHRGRGRGGRRRRSG 47
>02_05_0080 + 25665210-25665577,25665699-25666584
Length = 417
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 264 GIVNSRSFAYCSLALAAFCSHSVLSFIDFQISPP-FLAISV 145
G++ S S A AA + V+++ID +SPP FL S+
Sbjct: 252 GVLGSCDIESASAAFAALSAGDVMTYIDCSLSPPEFLLRSI 292
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 222 LAAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFI 115
L F + + S + + PPF+A +V + PG +F+
Sbjct: 64 LQGFLGYVISSTQEAAVLPPFVAFAVRMNPGIWEFV 99
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 168 PPFLAISVTLKPGFSDFICSLALFNHSMYADIGRF 64
PP + S L G +C + NH YAD GRF
Sbjct: 45 PPAASSSSLLPVGRKPRVCVPGVPNHLTYADFGRF 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,850,182
Number of Sequences: 37544
Number of extensions: 201626
Number of successful extensions: 522
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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