Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30962
(664 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 77 1e-14
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 48 9e-06
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 47 1e-05
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 8e-05
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 42 3e-04
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 6e-04
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 6e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 41 0.001
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 39 0.003
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 38 0.007
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 37 0.013
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 37 0.017
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 36 0.022
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 36 0.029
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 33 0.21
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 33 0.27
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 31 0.63
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 29 3.4
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021) 29 4.5
SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45) 29 4.5
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 77.4 bits (182), Expect = 1e-14
Identities = 31/56 (55%), Positives = 43/56 (76%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTEW 205
KK K + PKR MSAYMLWLN R++IK + PG+ VTE++K GE+WK++ DK++W
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKW 589
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Frame = +2
Query: 53 TDKP--KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
T KP KRPM+A+M+W +AR ++ + P L E++K G++WK + D
Sbjct: 59 TQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 44 VKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
VK + KRPM+A+M+W R +I E P + +EI+K+ G WK + D
Sbjct: 321 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 44 VKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
VK + KRPM+A+M+W R +I E P + +EI+K+ G WK + D
Sbjct: 4 VKPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +2
Query: 41 KVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
K D+ KRPM+A+M+W R ++ + P + +EI+K+ G WK + ++
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM--KDKTEW 205
+K+ K +KPKR +SAY ++N R+ +K + P ++K GE+W M DKT++
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQY 151
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +2
Query: 47 KMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
K +KPK SAY +L RE+++ E + + +K E WK+M ++
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEE 56
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/47 (34%), Positives = 30/47 (63%)
Frame = +2
Query: 47 KMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
K K KRPM+++M+W SAR ++ + P + E++K G++W+ +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 47 KMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
K D KRPM+AYM+W R +I E P + +EI+K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/54 (27%), Positives = 34/54 (62%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
++K K+ +P +P+SAY ++ + I+ + P + EIAK G++W+++ ++
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEE 969
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKS-EXPGLRVTEIAKKGGEIWKSMKDK 196
KRPM+A+M+W + R +IKS E P + +EI+K G WK+MKD+
Sbjct: 10 KRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
KK KRPM+A+M+W R ++ E P + EI+K+ G+ WK + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSE 88
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLW---LNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
RKK +KPK P++ Y+ + LNS RE +K + P L EI K G+ W S+
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSL 238
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
KRPM+A+M+W + R Q+ +E P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
KRPM+A+M+W + R Q+ +E P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
D KRP++++M+W R + E P +R EI+K G+ W+ M +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPE 53
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 59 KPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTE 202
K KRPM+A+M+W R I P EI+ + GEIW + + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQ 147
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
KRPM+++M+W R + E P L EI+K G+ W + K
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTK 138
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
KRPM+ +M+W R QI E PG+ ++K G WK +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 53 TDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
T++ KRPM+A+M+W R ++ P L E++K G W+++
Sbjct: 363 TERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/48 (31%), Positives = 30/48 (62%)
Frame = +2
Query: 53 TDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
++K KRP++A++LW R I +E P + +I++K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 8 KNYFKIFAIRKKVKMTDKPKRPMSAYMLWLNSAREQI--KSEXPGLRVTEIAKKGGEIWK 181
+ Y K K DKPKRP +AY L+L + R+++ K+ G ++ +A GE W+
Sbjct: 559 QRYLKESGKNDPKKDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWR 615
Query: 182 SMKDK 196
M D+
Sbjct: 616 EMSDE 620
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 35 RKKVKMTDKP--KRPMSAYMLWLNSAREQIKSEX-----PGLRVTEIAKKGGEIWKSMKD 193
RKK D P KR SAY+ + + R ++K++ P + E+AK GE WK + D
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 194 K 196
+
Sbjct: 545 E 545
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 36.7 bits (81), Expect = 0.017
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 62 PKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
P++P+ YM + +Q+K++ P ++ +I K G++W+ + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 36.3 bits (80), Expect = 0.022
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
++PK P+++Y + R ++ + P L+ TE+A K + W+ M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
Score = 35.1 bits (77), Expect = 0.051
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 71 PMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
P+SA+ LW N AR+ + P + ++ KK WK + +K
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEK 271
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
KRPM+A+M+W + R ++ + P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMK--DKTEW 205
D+ + + + LWL R+QI+ E P + ++ K + WK + +K W
Sbjct: 327 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVW 378
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
D+ + + + LWL R+QI+ E P + ++ K + WK +
Sbjct: 34 DRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGL 77
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
K PM+A+M+ R+ S PG+ +E +K G WK +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKS 184
KR S Y+L+ + R I+ E P EI++ GE W++
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 75
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 65 KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKS 184
KR S Y+L+ + R I+ E P EI++ GE W++
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 1308
>SB_1995| Best HMM Match : Acyltransferase (HMM E-Value=0.00021)
Length = 127
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 661 IITKHYNIRKI*RNIESRNELFNCIL*TKYQLQLKMIPTLIKC 533
I +K++ +R + +E+ E NCI+ + +Q L M P L C
Sbjct: 32 ISSKYFRVRVEAKGLENLPENKNCIIVSNHQSSLDMFPILRIC 74
>SB_53078| Best HMM Match : Acyltransferase (HMM E-Value=2.8026e-45)
Length = 218
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 661 IITKHYNIRKI*RNIESRNELFNCIL*TKYQLQLKMIPTLIKC 533
I +K++ +R + +E+ E NCI+ + +Q L M P L C
Sbjct: 32 ISSKYFRVRVEAKGLENLPENKNCIIVSNHQSSLDMFPILRIC 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,646
Number of Sequences: 59808
Number of extensions: 248886
Number of successful extensions: 566
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -