Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30962
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 52 3e-07
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 52 3e-07
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 52 5e-07
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 51 6e-07
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 45 6e-05
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 43 2e-04
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 40 0.001
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 40 0.001
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 40 0.001
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 40 0.001
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 40 0.001
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 38 0.008
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 38 0.008
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 38 0.008
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 38 0.008
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 31 0.55
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 31 0.96
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 31 0.96
AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical ... 30 1.3
AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical... 30 1.3
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 28 6.8
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 28 6.8
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +2
Query: 41 KVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTEW 205
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRW 73
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/55 (41%), Positives = 32/55 (58%)
Frame = +2
Query: 41 KVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTEW 205
K K + PKR MSA+ W+ RE+IK PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRW 73
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMK--DKTEW 205
KK K ++PKR +AY++W N+ R +K + G + ++AKK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEW 608
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMK--DKTEW 205
KK K + PKR SAYM W ++R ++K + G V ++AKKGG WK+M DK +W
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKW 603
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +2
Query: 47 KMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
K D+ KRPM+A+M+W R+++ E P + +EI+K+ G WK + ++
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +2
Query: 47 KMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
K ++ KRPM+A+M+W R +I P + EI+K+ G W+S+ D+
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
D KRPM+A+M+W R ++ + P + +EI+K+ G WK + ++
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
R + K + KRPM+A+M+W R +I P + + I+K G WK M +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSN 372
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 35 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTE 202
RK+ K PKR +SA+ + R +I++ P +V ++A++ G++WK + +T+
Sbjct: 124 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 77 SAYMLWLNSAREQIKSEXPG--LRVTEIAKKGGEIWKSMKD 193
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 49 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 35 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTE 202
RK+ K PKR +SA+ + R +I++ P +V ++A++ G++WK + +T+
Sbjct: 123 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 77 SAYMLWLNSAREQIKSEXPG--LRVTEIAKKGGEIWKSMKD 193
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 35 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTE 202
RK+ K PKR +SA+ + R +I++ P +V ++A++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 77 SAYMLWLNSAREQIKSEXPG--LRVTEIAKKGGEIWKSMKD 193
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 35 RKKVKMTDK-PKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDKTE 202
RK+ K PKR +SA+ + R +I++ P +V ++A++ G++WK + +T+
Sbjct: 125 RKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 77 SAYMLWLNSAREQIKSEXPG--LRVTEIAKKGGEIWKSMKD 193
S Y ++ E+ K + P ++VTEI+KK E WK+M D
Sbjct: 50 SPYGFFVKMCYEEHKKKYPNENVQVTEISKKCSEKWKTMVD 90
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 156 PKKAVKFGNQ*KTKLNGNRKLPRPRSNMQKT*NLQCQWRWWRRGRKEGSKTREKGQE 326
PK+ + Q +L+ P+P+S +Q + R + G+K G+K +E+ +E
Sbjct: 8 PKELKEDSTQQSDELSQKEPRPKPKSKVQTAERIPSSKRRSKSGKKRGTKEKERSKE 64
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 50 MTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
MT K + S Y+L+ R++I E P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 50 MTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
MT K + S Y+L+ R++I E P E++K G WK + ++
Sbjct: 1445 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 1493
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 50 MTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
MT K + S Y+L+ R++I E P E++K G WK + ++
Sbjct: 75 MTPKAVKSKSGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEE 123
>AC006769-1|AAF60590.2| 287|Caenorhabditis elegans Hypothetical
protein Y45G12C.8 protein.
Length = 287
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 162 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 34
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>AC006722-17|ABP57812.1| 141|Caenorhabditis elegans Hypothetical
protein Y19D10A.17 protein.
Length = 141
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 162 FLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTFFL 34
FLA+ + FS F C A N SM +FGL I+ FF+
Sbjct: 17 FLALYLNSFILFSIFYCKRAHVNRSMILIYFKFGLDAIIMFFM 59
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 35 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
R KV + +RPM+A+M++ R + + P ++K GE W S+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 35 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
R KV + +RPM+A+M++ R + + P ++K GE W S+
Sbjct: 833 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 884
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 35 RKKVKMTDKP-KRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
R KV + +RPM+A+M++ R + + P ++K GE W S+
Sbjct: 68 RSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSL 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,205
Number of Sequences: 27780
Number of extensions: 194061
Number of successful extensions: 500
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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