Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30962
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 49 3e-06
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 48 4e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 45 5e-05
At3g28730.1 68416.m03587 structure-specific recognition protein ... 44 7e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 44 1e-04
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 43 2e-04
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 43 2e-04
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 43 2e-04
At5g23405.2 68418.m02742 high mobility group (HMG1/2) family pro... 33 0.22
At5g23405.1 68418.m02741 high mobility group (HMG1/2) family pro... 33 0.22
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 29 2.8
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 29 2.8
At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family p... 29 3.6
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 28 6.4
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 28 6.4
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
+K ++KPKRP++A+ ++++ R+ KSE G + AK GGE WKS+ ++
Sbjct: 106 KKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEE 159
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/53 (41%), Positives = 34/53 (64%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
KK+K KPK+P+SAY+++ N R +K E V E+AK GE WK++ ++
Sbjct: 238 KKIKDPLKPKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEE 288
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
+KPK+P S+Y L+ AR+ + E PG+ + + W + ++
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEE 416
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
+KK K + KRP + Y+LW ++K + P E + G WK +
Sbjct: 120 KKKKKDCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/53 (41%), Positives = 32/53 (60%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
KK K KPK P+SA++++ N R ++ E V E+AK GE WK++ DK
Sbjct: 247 KKEKDPLKPKHPVSAFLVYANERRAALREENKS--VVEVAKITGEEWKNLSDK 297
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 29 AIRKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
A +KK K + KRP S+Y+LW ++K E P E + G WKS+
Sbjct: 127 ANKKKKKDCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +2
Query: 56 DKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKDK 196
+KPK+P S+Y L+ R+++ E PG + WK + ++
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEE 423
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 38 KKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSM 187
KK K + PKR MS +M + R+ IK E PG+ E+ K G+ W+ M
Sbjct: 554 KKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 47 KMTDKPKRPMSAYMLWLNSAREQIKSEXP-GLRVTEIAKKGGEIWKSMKD 193
K +KPKRP SA+ +++ R K E P V + K GGE WKS+ D
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLR-VTEIAKKGGEIWKSM 187
+K K +KPKR SA+ ++L R K E P ++ V+ + K GG+ WKSM
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 35 RKKVKMTDKPKRPMSAYMLWLNSAREQIKSEXPGLR-VTEIAKKGGEIWKSM 187
+K K +KPKR SA+ ++L R K E P ++ V+ + K GG+ WKSM
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSM 95
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 47 KMTDKPKRPMSAYMLWLNSAREQIKSEXP-GLRVTEIAKKGGEIWKSMKD 193
K +KPKRP SA+ +++ RE K E P V + K G+ WKS+ D
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSD 82
>At5g23405.2 68418.m02742 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 148
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 41 KVKMTDKPKRPMSA--YMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 53 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 105
>At5g23405.1 68418.m02741 high mobility group (HMG1/2) family
protein contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 149
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 41 KVKMTDKPKRPMSA--YMLWLNSAREQIKSEXPGLRVTEIAKKGGEIWKSMKD 193
K K T+K K S + +++N R+ +++ G V E +K G E+WKSM +
Sbjct: 54 KKKPTNKKKSTTSLTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTE 106
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 334 QQFSCPFSLVFEPSFRPLRHH 272
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 334 QQFSCPFSLVFEPSFRPLRHH 272
+ FSCPF LV SF+ LR+H
Sbjct: 322 EDFSCPFCLVKCASFKGLRYH 342
>At5g38460.1 68418.m04649 ALG6, ALG8 glycosyltransferase family
protein similar to SP|Q9Y672 Dolichyl pyrophosphate
Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC 2.4.1.-)
(Dolichyl-P-Glc:Man9GlcNAc2-PP-dolichyl
glucosyltransferase) {Homo sapiens}; contains Pfam
profile PF03155: ALG6, ALG8 glycosyltransferase family
Length = 533
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = -2
Query: 219 AAFCSHSVLSFIDFQISPPFLAISVTLKPGFSDFICSLALFNHSMYADIGRFGLSVILTF 40
A C VL+ + F ++ +S P F + L S + + G++VI+TF
Sbjct: 219 AVLCESEVLTCVLFSLALSHKQMSAYFAPAFFSHLLGKCLRRKSPILSVIKLGIAVIVTF 278
Query: 39 FL 34
+
Sbjct: 279 VI 280
>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 27.9 bits (59), Expect = 6.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 528 QNQCQMHSYRLWKVSPVLLCNKLSPSK 448
+N + + ++W + PV LCNK+ K
Sbjct: 238 KNYTEARAGKVWSIGPVSLCNKVGEDK 264
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 213 FCSHSVLSFIDFQISPPFLAISVT 142
FC+ SV ++FQI PP + VT
Sbjct: 139 FCADSVFPLLNFQIDPPVQKLYVT 162
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,810,937
Number of Sequences: 28952
Number of extensions: 174851
Number of successful extensions: 457
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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