Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30961
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    30   1.9  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    30   1.9  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   5.7  
AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode asta...    28   7.5  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    27   9.9  
AL132898-20|CAC14415.2|  243|Caenorhabditis elegans Hypothetical...    27   9.9  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 253 EKAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 345
           E   P P   +E+P +PE  ++   P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 253 EKAEPAPVSNDEVPAIPEAKKDDIAPEDSDI 345
           E   P P   +E+P +PE  ++   P DS+I
Sbjct: 532 EDTTPGPAVTEEIPEVPEPTEEPPTPTDSEI 562


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 317 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 353


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/39 (41%), Positives = 25/39 (64%)
 Frame = +2

Query: 131 VSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAAT 247
           V++ +PVA EKDV+PA+ +L    ++   + PTE A  T
Sbjct: 515 VTVVIPVASEKDVLPARKLLARQARL--CLFPTEEARKT 551


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 400 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKNLVLLMQKVL 555
           K SE      K+ D KVE+   + E +K E Q    EFQK+   V  ++K L
Sbjct: 715 KESEEVKKTGKNKD-KVEKTKEEVEKAKEEFQKVKEEFQKEVEKVKKVEKEL 765


>AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode astacin
           protease protein 2 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 194 VAPKIDDSVKPTEVAAATEERKPNL-LQLVTTRYPLYQRPK 313
           VAPK+ +  K  E+A +T+  K    ++L+ T+ P ++  K
Sbjct: 15  VAPKVLEPEKDDEIAVSTQREKTFFDMKLILTKLPTFEPSK 55


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
            protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 400  KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKN 528
            K+ E+   E ++++   +E +  PE+ K   + T AE+  +++
Sbjct: 1501 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1543


>AL132898-20|CAC14415.2|  243|Caenorhabditis elegans Hypothetical
           protein Y59A8B.19 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 83  SIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEERKP 262
           SIF +  L+ C+A    S  +P  E    VP  P +     I D V+   V     E   
Sbjct: 3   SIFYLLALIACVANFGFSQDLPAPE----VPEIPEVPDVGAITDQVQVEAVLKLVTELLA 58

Query: 263 NLLQLVTT 286
            +L+LVT+
Sbjct: 59  TVLKLVTS 66


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
            protein F15E6.1 protein.
          Length = 1655

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +1

Query: 400  KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEFQKKKN 528
            K+ E+   E ++++   +E +  PE+ K   + T AE+  +++
Sbjct: 1480 KTEEVDGIEREASESSSKESSVAPEEKKNPKKITFAEYNSRRS 1522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,837,056
Number of Sequences: 27780
Number of extensions: 249500
Number of successful extensions: 924
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)