Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30960
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    29   0.66 
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    26   6.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.1  

>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 183 DKPEI*PETLYYKHDNIILQQSINLPDAILGSFKEASE 296
           D  E+ PE + Y +DNI     +NL D +L   KE +E
Sbjct: 485 DIDELAPEIMEYYYDNITFTPFVNLDDELLLIEKEKNE 522


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 205 SGHISGLSSILFALSIDR-PELNESQQSSQVDKVEHVIPLPTPVKSSGNLKRKPLRQVIS 29
           SGH+SGL+ I   ++ID     +E+ Q  +       I LP P+  +    + P   ++ 
Sbjct: 355 SGHLSGLAGINMLVNIDPFGSFDENAQVMRYSANAREI-LPPPLNENSG-SQSPSHSLLQ 412

Query: 28  FDKNERKTQ 2
             KN   T+
Sbjct: 413 KSKNTSSTK 421


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 230 VIMFIIQCFWSYFRLIIHSIC 168
           +I F++ CF SYF  I H  C
Sbjct: 537 LIGFVLACFGSYFMYINHGWC 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,641,694
Number of Sequences: 5004
Number of extensions: 76123
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)