Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30960
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    32   0.69 
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796...    29   3.7  
04_03_1026 - 21806124-21806225,21807017-21807055,21807307-218074...    29   3.7  
02_05_0795 - 31792231-31794780                                         29   6.5  

>05_07_0004 +
           26990250-26990516,26990877-26990931,26991286-26991461,
           26991702-26991923,26992001-26992239,26992437-26992962,
           26993042-26993315,26993391-26994009,26994082-26994121,
           26994263-26994310,26994548-26994814,26994892-26995155,
           26995260-26995904
          Length = 1213

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
 Frame = +2

Query: 704 MQTIILANGQLYYIYLSNDL---SFKGALKECSKISKGCGYVGHIFKSSFSGLV 856
           ++T++  NG+   I L NDL   ++KGA+KE      G G++  I+ SSF GL+
Sbjct: 238 IRTVVSFNGEKKAIGLYNDLIKKAYKGAVKEGFIQGFGMGFLNLIYFSSF-GLI 290


>12_01_1064 -
           10978039-10978190,10978731-10978865,10979217-10979605,
           10979669-10979892,10980011-10980172,10980256-10980906,
           10981583-10981804
          Length = 644

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 333 NKPCATQLCRYLNFNIYYNTTKTFTQNENYEHFV-KLFP 446
           N P A Q CR +  ++ +NTT   T  E + H   +LFP
Sbjct: 479 NSP-APQPCRIITLDVAFNTTPQITSTEPHPHLPGELFP 516


>04_03_1026 -
           21806124-21806225,21807017-21807055,21807307-21807407,
           21807924-21808185,21808334-21808458,21809058-21809637
          Length = 402

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 771 REPLRNALKYPRGVVMLAIFLNLPFQV 851
           R+P   A+ YP G   L +++++P++V
Sbjct: 305 RDPFHRAIPYPNGCPELKVYISVPYEV 331


>02_05_0795 - 31792231-31794780
          Length = 849

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 159 IDNANRMDDKPEI*PETLYYKHDNIILQQSINLPDAILGSFKEASESLTRAPSS 320
           +D+  +MD   E+  E    K DNI L      PDA  G F    +  T  P S
Sbjct: 723 VDSPKKMDVNNEVKYEV---KVDNIDLDDLFRTPDAAFGGFSVLHDPSTSEPDS 773


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,595,337
Number of Sequences: 37544
Number of extensions: 412044
Number of successful extensions: 809
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)