Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30960
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39455| Best HMM Match : PAN (HMM E-Value=1.5)                       30   2.1  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             29   3.7  
SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)           29   4.9  
SB_11179| Best HMM Match : ERM (HMM E-Value=4)                         29   4.9  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    29   4.9  
SB_27692| Best HMM Match : PAN (HMM E-Value=1.7)                       29   6.5  
SB_31798| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_39455| Best HMM Match : PAN (HMM E-Value=1.5)
          Length = 109

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = +3

Query: 324 YSIN---KP--CATQLCRYLNFNIYYNTTKTFTQNENYEHFVK 437
           YS N   KP  C T LC  L +   YN +  + +NEN++H+ K
Sbjct: 67  YSFNFAVKPEECGTYLCEVL-YTDRYNDSDKYHKNENFDHYNK 108


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 731 QLYYIYLSN-DLSFKGALKECSKISKGCGYVGHIFK 835
           QLY  Y  N D    GAL  C +  + CG +GH+ K
Sbjct: 620 QLYDEYFFNVDYLTDGALAPCDRNCRVCGRIGHLAK 655


>SB_18244| Best HMM Match : Fukutin-related (HMM E-Value=3.7)
          Length = 540

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 249 YFVAKLCYHVYNTMFLVIFQAYHPFYLRYQL 157
           Y V    YHVY T + V    YH +  RY L
Sbjct: 249 YHVYMTRYHVYMTRYHVYMTRYHVYMTRYHL 279


>SB_11179| Best HMM Match : ERM (HMM E-Value=4)
          Length = 407

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 261 DAILGSFKEASESLTRAPSS*YSINKPCATQLCRYLNFNIYYNTTKTFTQNENY 422
           DAI  S  E  E  T++    + + K C  Q+ RY+  +   +  +   Q  NY
Sbjct: 234 DAIKNSLSEVQEDDTKSAKVKHLLRKLCVEQISRYIGRHCGLSDDEKIQQARNY 287


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 45   NGFRFKFPEDLTGVGSGITCSTLST*LDCCDSFNSGLSIDNANRMD 182
            N F+F  PED +G    +T S   T  D  ++F   L  D++  ++
Sbjct: 1181 NTFKFALPEDNSGEVDNVTTSAQETKSDAFNTFKFALPEDSSGEVN 1226


>SB_27692| Best HMM Match : PAN (HMM E-Value=1.7)
          Length = 109

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 324 YSIN---KP--CATQLCRYLNFNIYYNTTKTFTQNENYEHFVK 437
           YS N   KP  C T LC  L +   YN +  +  NEN++H+ K
Sbjct: 67  YSFNFAVKPEECGTYLCEVL-YTDRYNDSDKYHFNENFDHYHK 108


>SB_31798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 381 YYNTTKTFTQNENYEHFVKLFPHSFVNKFKFYCLNRQNR 497
           Y+    +F  +EN ++F +LF H   N FK   +N + R
Sbjct: 6   YFVGNYSFVASENCKYFAQLFAHRSSNLFKAPAINYRIR 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,963,579
Number of Sequences: 59808
Number of extensions: 518661
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)