Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30960
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    24   1.6  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   3.7  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    23   3.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   3.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   3.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   3.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   3.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   3.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   3.7  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.9  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 677 LLSHNLEKNMFSYNDSLVLGSVGRCRFAKF*VVLC 573
           +L H+  +N+F  ND L+   V     +   V+ C
Sbjct: 91  ILGHSERRNIFGENDELIAEKVAHALESGLKVIAC 125


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 366 LNFNIYYNTTKTFTQNENYEHFVKLF 443
           L+ N  Y+    +  N NY ++ KL+
Sbjct: 85  LSNNYNYSNYNNYNNNNNYNNYKKLY 110


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 360 RYLNFNIYYNTTKTFTQNENYEHFVKLFPHSFVN 461
           +Y N+N Y N       N    ++ KL+ +  +N
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +3

Query: 360 RYLNFNIYYNTTKTFTQNENYEHFVKLFPHSFVN 461
           +Y N+N Y N       N    ++ KL+ +  +N
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIIN 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,460
Number of Sequences: 438
Number of extensions: 5489
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)