Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30960
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20860.1 68416.m02637 protein kinase family protein contains ...    29   3.1  
At4g39420.1 68417.m05579 expressed protein  ; expression support...    29   4.1  

>At3g20860.1 68416.m02637 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 427

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = -3

Query: 241 CKIMLSCL*YNVSGHISGLSSILFALSIDRPELNESQQSSQVDKVEHVIPLPTPVKSSGN 62
           C  +L+ + Y     I  L   +F ++  +P       ++ ++K+      P PV  S +
Sbjct: 181 CPELLADIPYGYKSDIWSLGCCMFEVAAHQPAFKAPDMAALINKINRSSLSPLPVMYSSS 240

Query: 61  LKR 53
           LKR
Sbjct: 241 LKR 243


>At4g39420.1 68417.m05579 expressed protein  ; expression supported
           by MPSS
          Length = 781

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 638 YN*TYFFQDYGIVDNQNT*--SHEMQTIILANGQLYYIYLSNDLSFKGALKECSKISKGC 811
           Y  T+F + Y   D+++     + +QT + A    Y  Y  N  S +GA +     S GC
Sbjct: 622 YGFTHFSRKYTNKDDRSCKIFHYSLQTHMTARDDSYLNYDVNKNSIQGAEENFIGESVGC 681

Query: 812 GYVGHIFKSSFSGL 853
            + G +F  +  GL
Sbjct: 682 SFQGFLFLVTCDGL 695


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,331,124
Number of Sequences: 28952
Number of extensions: 366360
Number of successful extensions: 785
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)