Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30958
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    32   0.11 
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    27   3.0  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    26   6.9  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   6.9  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 22/66 (33%), Positives = 32/66 (48%)
 Frame = +3

Query: 456 QIFRRSMTRASNRCELLFLLTHPADSANNKPESLEYAIGKLRSYYKNLPLVPRDSVFRAS 635
           + +R+SM   SN   L+F++TH AD  +N+       IG L   Y  L  +  D VF   
Sbjct: 695 RFYRKSMATESNWTILMFMITHLADQISNR----SMFIGALEEIYNLLDFM-CDIVFERV 749

Query: 636 FISPNL 653
            IS  +
Sbjct: 750 SISAEI 755


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 6   LIVFL-TFSQSLGVDATCFHLPYSSIIYHFFPPYTY 110
           L+++L T ++  G+D    H PY S+IY+   P+T+
Sbjct: 377 LVLWLPTITEEYGIDDIPSH-PYLSLIYNSIQPFTH 411


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 234 WYRHVMRRNENEVAKRVLTMNVKGYIGRGRPKKKWMDCVKDDMCKG 97
           W ++ +  N  + A+ V+   +  YIG G  K  W++ V D   +G
Sbjct: 197 WGQYDVLANFYQKARSVVPSYLPVYIGDGWDKDHWVNWVNDHESEG 242


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 652 CSLNLHKSSYN*LKHTL*NEIIACELAHNADTFNRHENLLTF 777
           CS+N+  S+ + LK+     I+    A + DTF+    LL +
Sbjct: 260 CSINIDTSTVDKLKNVFHPNIVPFHSAFHTDTFHDSSLLLIY 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,419
Number of Sequences: 5004
Number of extensions: 59456
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)