Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30958
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0517 - 11125596-11126234,11126271-11126432                       29   3.1  
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409...    29   4.1  
06_01_0180 - 1397432-1399969                                           28   7.2  
04_04_1372 + 33008740-33009130,33009485-33011544                       28   9.5  
02_05_1158 - 34550049-34551241,34551354-34551521,34551847-345522...    28   9.5  

>02_02_0517 - 11125596-11126234,11126271-11126432
          Length = 266

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 300 IIR*RKSESGTCDREVRIARLGWYRHVMRRNENEVA 193
           ++R R+  + T      I R  W RH+M R+ENE+A
Sbjct: 26  LLRIRRRPATTVIGVNAINRRIWVRHIMERDENEIA 61


>12_01_1045 -
           10739396-10739402,10739968-10740239,10740361-10740941,
           10741566-10742586
          Length = 626

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 70  TPLSYTISSPLTHIVFHTIHPFLLR 144
           TP+ +  S PL H  FH  HP+++R
Sbjct: 363 TPVHFAASFPLWHRKFHWRHPWIIR 387


>06_01_0180 - 1397432-1399969
          Length = 845

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 198 PHFHFVSSHVYTIPNAQFSLLCHTCHFQTSSNVL 299
           P +HFV  +++ + N+ F L   T    T +NVL
Sbjct: 119 PGWHFVRLYLFPLKNSDFDLTTATFTVSTDTNVL 152


>04_04_1372 + 33008740-33009130,33009485-33011544
          Length = 816

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 7   SLFS*PSPSHLGLTQHVF--TFPTPLSYTISSPL 102
           SLFS P   HL L+Q++F  + P  LS  I+S L
Sbjct: 155 SLFSLPRLEHLSLSQNLFEGSIPVTLSSNITSAL 188


>02_05_1158 -
           34550049-34551241,34551354-34551521,34551847-34552231,
           34552245-34552772
          Length = 757

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 164 PFTFIVNTRLATSFSFRLI-TCLYHPKRAILTSLSHVPLS 280
           P+ F + +R A  F+FRL+    Y P R  ++ +  V LS
Sbjct: 44  PYPFGIGSRCARDFNFRLVCNHAYSPPRLFVSEVELVSLS 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,176,188
Number of Sequences: 37544
Number of extensions: 371875
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)