Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30958
(778 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 46 5e-05
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 42 6e-04
SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 42 6e-04
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 40 0.002
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 37 0.016
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 37 0.021
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2) 36 0.037
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36) 36 0.037
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.048
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 35 0.084
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 34 0.11
SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 29 4.2
SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25) 28 7.3
SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_44339| Best HMM Match : Leu_leader (HMM E-Value=2.4) 28 9.7
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9) 28 9.7
SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05) 28 9.7
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/61 (31%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVKDD 109
++++ + + ++ A+L WY HV+R E+ + ++VL + GY +GRPKK++ D +K +
Sbjct: 766 RADTTSIEAKILQAQLRWYGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSN 825
Query: 108 M 106
+
Sbjct: 826 L 826
>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 629
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVKDD 109
++++ + + ++ A+L W HV+R E+ + ++VL + GY +GRPKK++ D +K +
Sbjct: 487 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSN 546
Query: 108 M 106
+
Sbjct: 547 L 547
>SB_10620| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 159
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVKDD 109
++++ + + ++ A+L W HV+R E+ + ++VL + GY +GRPKK++ D +K +
Sbjct: 17 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSN 76
Query: 108 M 106
+
Sbjct: 77 L 77
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/61 (29%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVKDD 109
++++ + + ++ A+L W HV+R E+ + ++VL + GY +GRPKK++ D +K +
Sbjct: 3257 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVLYSELASGYRKKGRPKKRYKDNLKSN 3316
Query: 108 M 106
+
Sbjct: 3317 L 3317
>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 963
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/61 (27%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVKDD 109
++++ + + ++ A+L W HV+R E+ + ++V + GY +GRPKK++ D +K +
Sbjct: 821 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSN 880
Query: 108 M 106
+
Sbjct: 881 L 881
>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/61 (27%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVKDD 109
++++ + + ++ A+L W HV+R E+ + ++V + GY +GRPKK++ D +K +
Sbjct: 492 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVFYSELASGYRKKGRPKKRYKDNLKSN 551
Query: 108 M 106
+
Sbjct: 552 L 552
>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/61 (27%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVKDD 109
++++ + + ++ A+L W HV+R E+ + ++V + GY +GRPKK++ D +K +
Sbjct: 659 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVFYRELASGYRKKGRPKKRYKDNLKSN 718
Query: 108 M 106
+
Sbjct: 719 L 719
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 264 DREVRIARLGWYRHVMRRNENEVAKRVLTMNVKGYIGRGRPKKKWMDCVKDDMCKGG 94
D +R RL WY HV R + + ++G RGRP+K W + +++D+ G
Sbjct: 552 DAALRRRRLRWYGHVQR--STSWIRWIRDFIIEGKRTRGRPRKNWHEVLREDLKLAG 606
>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 401
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKKKWMDCVK 115
++++ + + ++ A+L W HV+R E+ + ++V ++ GY +G PKK++ D +K
Sbjct: 263 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVFYSDLASGYRKKGPPKKRYKDNLK 320
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -2
Query: 288 RKSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNVKGYIGRGRPKKKWMDCVKDD 109
+K+ S + E++ R+ W HV+R ++ + K L G GRPK W + +
Sbjct: 31 KKTRSHSVVDEIKCRRMRWLGHVLRMDQRRIPKVALRWTPPGRRKPGRPKTTWRRTILSE 90
Query: 108 M 106
+
Sbjct: 91 L 91
>SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)
Length = 259
Score = 35.9 bits (79), Expect = 0.037
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKK 136
++++ + + ++ A+L W HV+R E+ + ++VL + GY +GRPKK
Sbjct: 208 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVLYSELASGYRKKGRPKK 258
>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
Length = 1195
Score = 35.9 bits (79), Expect = 0.037
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNV-KGYIGRGRPKK 136
++++ + + ++ A+L W HV+R E+ + ++VL + GY +GRPKK
Sbjct: 1027 RADTTSIEAKILQAQLRWSGHVIRMEESRIPRQVLYSELASGYRKKGRPKK 1077
>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 35.5 bits (78), Expect = 0.048
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -2
Query: 255 VRIARLGWYRHVMRRNENEVAKRVLTMNVKGYIGRGRPKKKWMDCVKDDMCKGG 94
+R ARL W+ HV R + G +GRP+K W D D+ G
Sbjct: 46 LRKARLQWFGHVERAQAPNPVSSIRDFEPGGRRMKGRPRKTWADATLSDLKTAG 99
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 34.7 bits (76), Expect = 0.084
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNVKGYIGRGRPKKKWMDCVKDDM 106
K+ S +E++ RL W HV+R + + K G GRPK W ++ ++
Sbjct: 571 KTGSYNITQEIKRCRLKWLGHVLRMGQERIPKTSALWTSIGKRKLGRPKTTWRRTIQAEL 630
Query: 105 CKGG 94
+ G
Sbjct: 631 LEMG 634
>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 280
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNVKGYIGRGRPKKKWMDCVKDDM 106
K+ S +E++ RL W HV+R + + K G GRPK W ++ ++
Sbjct: 185 KTGSYNITQEIKRRRLKWLGHVLRMGQERIPKTSALWTPIGKRKPGRPKTTWRRTIQAEL 244
Query: 105 CKGG 94
+ G
Sbjct: 245 LEMG 248
>SB_21608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -2
Query: 285 KSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNVKGYIGRGRPKKKWMDCVKDDM 106
K+ S +E++ RL W HV+R + + K G GRPK W ++ ++
Sbjct: 32 KTGSYNITQEIKRRRLKWLGHVLRMGQERIPKTSALWTPIGKRKPGRPKTTWRRTIQAEL 91
Query: 105 CKGG 94
+ G
Sbjct: 92 LEMG 95
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 288 RKSESGTCDREVRIARLGWYRHVMRRNENEVAKRVLTMNVKGYIGRGRPK 139
+ + S + ++R RL W HV+R ++ + K L G GRPK
Sbjct: 31 KNTSSSSLVNQIRYRRLKWLGHVLRMDQQRIPKIDLHWTPAGRRKPGRPK 80
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 46 TQHVFTFPTPLSYTISSPLTHIVFHTIHPFLL 141
T H+ T T ++ IS+P T H++HP LL
Sbjct: 656 THHITTPETTSTHHISTPQTTSTHHSLHPKLL 687
>SB_27024| Best HMM Match : Pkinase (HMM E-Value=4.7e-25)
Length = 1595
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 164 PFTFIVNTRLATSFSFRLITCLYHPKRAI 250
PF F + T A + F I+C YHP +
Sbjct: 217 PFNFTLPTCAAAALMFSTISCPYHPDSVV 245
>SB_56230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 516 THPADSANNKPESLEYAIGKLRSYYKNLPLVPRDSVF 626
++P DS+ N E L+Y+ R +Y+ PL S F
Sbjct: 288 SYPTDSSANHREYLQYSWASFRQWYRFQPLNEIKSYF 324
>SB_44339| Best HMM Match : Leu_leader (HMM E-Value=2.4)
Length = 493
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 555 ATRVYCSRCRRGALTKIITRS 493
A R+Y SRC +G++T ++ RS
Sbjct: 385 AQRLYYSRCAKGSITHVLQRS 405
>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
Length = 292
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 423 RIQPCGRRGAGQIFRRSMTRASNRCELLFLLTHPADSANNKPESLEYAI 569
R GR+G+G+++R ++ SN + + L A SA ++ +YA+
Sbjct: 54 RFDTPGRKGSGEMYRPRESKISNIKDHITRLRQLAVSAKTAADAEDYAV 102
>SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05)
Length = 426
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 167 FTFIVNTRLATSFSFRLITCLYHPKRAILTSLSH 268
F V T LA F++RL+ +PK+ ++T +SH
Sbjct: 2 FVVTVFTLLAVYFAYRLLRSFLYPKK-LITDVSH 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,726,106
Number of Sequences: 59808
Number of extensions: 465141
Number of successful extensions: 1146
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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