Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30958
         (778 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   3.5  
AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein prot...    24   4.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   6.0  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 50  NMFSPSLLLYHIP--FLPPLHISSFTQSIHFFLGLPL-PIYPF 169
           N+F+P+ L YH P  +L P +      S H   G PL P  P+
Sbjct: 380 NLFNPAALAYHDPAIYLDPRY-QMLRASHHSAAGHPLYPSLPY 421


>AJ302656-1|CAC35521.1|  385|Anopheles gambiae gSG1b protein
           protein.
          Length = 385

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 447 GAGQIFRRSMTRASNRCELLFLLTH 521
           GAG  F+R++   +NR +L  L  H
Sbjct: 239 GAGAYFQRALLTGANRYDLFLLDEH 263


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 564  RIRATRVYCSRCRRGALTKIITRSD*RRESSTFEKSDLRRAARK 433
            R+   R+Y  R R G L  +    + R  S+  E   +RR  R+
Sbjct: 1140 RLYLQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADTIRRRMRR 1183


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 757,308
Number of Sequences: 2352
Number of extensions: 13419
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)