Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30958
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   7.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +3

Query: 519 HPADSANNKPESLEYAIGKLRSYYKNLPL 605
           H  DS   KPE +EY        YK + +
Sbjct: 165 HHMDSVEYKPEIMEYKPDVEEQRYKQVEI 193


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 495 CELLFLLTHPADSANNKPESLEYAIGKLRSYYKNLP 602
           CE +  L  P     N P   EY    L+ Y  ++P
Sbjct: 229 CEDMRFLDEPLSGETNDPNKTEYT---LKIYTHDIP 261


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 60  HLPYSSIIYHFFPPYTYRL 116
           H+  S++   F PP  YRL
Sbjct: 143 HIGPSTLFPRFIPPNAYRL 161


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 495 CELLFLLTHPADSANNKPESLEYAIGKLRSYYKNLP 602
           CE +  L  P     N P   EY    L+ Y  ++P
Sbjct: 229 CEDMRFLDEPLSGETNDPNKTEYT---LKIYTHDIP 261


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 56  FSPSLLLYHIPFLPPLHISSFTQSIH 133
           F+P LLL+  P  P  +  S +  +H
Sbjct: 883 FAPLLLLHLTPLQPRFYSISSSPDVH 908


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,521
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)