Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30958
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09580.1 68418.m01109 expressed protein  ; expression support...    29   2.6  
At4g06479.1 68417.m00885 hypothetical protein                          28   7.9  
At3g21690.1 68416.m02734 MATE efflux family protein similar to r...    28   7.9  

>At5g09580.1 68418.m01109 expressed protein  ; expression supported
           by MPSS
          Length = 393

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 62  PSLLLYHIPFLPPLHISSFTQSIHFFLGLPLPIYPFTFIVNTRL 193
           P+L+LY+ P       + F    H+ L LP  I PF+ ++  R+
Sbjct: 73  PNLVLYNYPSFSGAFSALFAHLYHYRLRLPCLILPFSSLIPFRV 116


>At4g06479.1 68417.m00885 hypothetical protein
          Length = 370

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = +3

Query: 384 VSSDHSIRTMAR*RIQPCGRRGAGQIFRRSMTRASNRCELLFLLTHPADSANNKPESLEY 563
           V   + I +  +  IQ   R+  G   ++  T A   CE+     HP +     P+++ Y
Sbjct: 264 VGIGYGINSKVKPGIQATARKSVG---KKLATPAKRPCEICSHTDHPTEECLYPPQTIPY 320

Query: 564 AIGKLRSYY 590
                + YY
Sbjct: 321 TDDYAKCYY 329


>At3g21690.1 68416.m02734 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           MatE uncharacterized membrane protein family
          Length = 506

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +3

Query: 75  SIIYHFFPPYTYRLSHNPSISS*VYLFLYILSHS*LTLA*Q-PHFHFVSSHVYTIPNAQF 251
           ++IY F  P    L  +P+I+S   LF+Y L       A   P   F+ S     P+A  
Sbjct: 149 TLIYVFSEPILLFLGESPAIASAASLFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYI 208

Query: 252 SLLCHTCHFQTSSNVLFRIRIRILSTHL 335
           S      H   S   ++++ + +L   L
Sbjct: 209 STATLFVHLLLSWLAVYKLGMGLLGASL 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,880
Number of Sequences: 28952
Number of extensions: 304942
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)