Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30957
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 149 3e-37
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 149 4e-37
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.7
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 27 3.0
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 27 3.9
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 27 3.9
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 6.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 149 bits (362), Expect = 3e-37
Identities = 66/85 (77%), Positives = 77/85 (90%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
RPGSK++K+EI+EAVTIIETPPMV+
Sbjct: 62 RPGSKMHKREILEAVTIIETPPMVV 86
Score = 145 bits (352), Expect = 5e-36
Identities = 72/169 (42%), Positives = 102/169 (60%)
Frame = +1
Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ + + +SI
Sbjct: 87 VGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSI 144
Query: 436 EKDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPIP 615
++ +++ +YCSVVRV+AHTQ++ +++ L + + K +EK +
Sbjct: 145 NRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVD 204
Query: 616 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
+ S F Q+EMID I +RW TK+LPRKTH+GLRKVACIG
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIG 253
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 149 bits (361), Expect = 4e-37
Identities = 65/85 (76%), Positives = 77/85 (90%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SH KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
RPGSK++K+EI+EAVT+IETPPMV+
Sbjct: 62 RPGSKMHKREILEAVTVIETPPMVV 86
Score = 145 bits (352), Expect = 5e-36
Identities = 72/169 (42%), Positives = 102/169 (60%)
Frame = +1
Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+ + + +SI
Sbjct: 87 VGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSI 144
Query: 436 EKDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPIP 615
++ +++ +YCSVVRV+AHTQ++ +++ L + + K +EK +
Sbjct: 145 NRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVD 204
Query: 616 VDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
+ S F Q+EMID I +RW TK+LPRKTH+GLRKVACIG
Sbjct: 205 IKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIG 253
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 347 RRRQSSDICSAQTVKRARSP*GVSMYPTTPTKPSEESR 234
+R D SA+ K AR P PTTP+ P++ ++
Sbjct: 469 KRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQ 506
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 537 MEIQLNGGTIEDKVKWAREHLG 602
M +Q G TI KW REH G
Sbjct: 46 MPVQYKGQTISASHKWTREHSG 67
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 272 TLRPLMDYALF*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 424
TL DYA+ S +S+ LK V+ T T RRR + RN + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 599 GRNLSLSILCLPKMK*LTALVSPRAKDTKVSLLVGTQRSYP 721
G+N+ I + ++K K+T++ L+VG RS+P
Sbjct: 19 GKNIETIINIMTRLKNEVVATEELLKETRLGLVVGKLRSHP 59
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 175 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 11
F N VG G+I D S + +R+VF D +G L ++SH T F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 429 FASKLILPFLTGFSESLLLAFVPVFVEATST 337
F SKL L + F E + LAF+ F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,955
Number of Sequences: 5004
Number of extensions: 68485
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -