Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30957
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   149   2e-36
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   147   1e-35
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    29   3.1  
01_04_0043 + 15375459-15377606                                         29   4.1  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  149 bits (361), Expect = 2e-36
 Identities = 64/85 (75%), Positives = 76/85 (89%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE +
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVE 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           +PGSK++KKE  EAVTIIETPP+V+
Sbjct: 62  KPGSKLHKKETCEAVTIIETPPLVI 86



 Score =  146 bits (354), Expect = 2e-35
 Identities = 73/170 (42%), Positives = 102/170 (60%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
           VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW              +  + G+K I
Sbjct: 87  VGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEI 146

Query: 436 EKDFKKMIRYCSVVRVIAHTQM-KL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPI 612
           +   +KM +Y S+VRVIAHTQ+ K+    +++  L +  +       K +     +EK I
Sbjct: 147 QMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEI 206

Query: 613 PVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
           PVD+VF +DEMID I            +RW   +LPRKTH+GLRKVACIG
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  147 bits (356), Expect = 1e-35
 Identities = 63/85 (74%), Positives = 76/85 (89%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE +
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVE 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           +PGSK++KKE  EAVTIIETPP+V+
Sbjct: 62  KPGSKLHKKETCEAVTIIETPPIVV 86



 Score =  145 bits (351), Expect = 4e-35
 Identities = 73/170 (42%), Positives = 101/170 (59%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
           VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW              +  + G+K I
Sbjct: 87  VGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEI 146

Query: 436 EKDFKKMIRYCSVVRVIAHTQM-KL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPI 612
           +   +KM +Y SVVRVI HTQ+ K+    +++  L +  +       K +     +EK I
Sbjct: 147 QMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEI 206

Query: 613 PVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
           PVD+VF +DEMID I            +RW   +LPRKTH+GLRKVACIG
Sbjct: 207 PVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 432 NRKRFQEDDPLL*CCKSHCPHSNEAVKQR 518
           N +RF  +DPLL CC  H P+   A   R
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDR 325


>01_04_0043 + 15375459-15377606
          Length = 715

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
 Frame = -1

Query: 525 SFVAVLQLHLSVGNDSYNTTVADHLLEIFFY*FASKLILPFLT-GFSESLLLAFVPVFVE 349
           + V+++ L L V   SY        L +F +  AS L LP ++   S +       V + 
Sbjct: 15  AIVSIVLLALLVVLSSYRRRSGHPALRLFVW-AASTLFLPLVSYAVSAAAKWDAARVPLL 73

Query: 348 ATSTVFRHMLRPDSQKSA*SMRGLNVSNNTDKTIGGVSMMVTASTISFLLIFEPGRSGS 172
              TVF  MLR     +  S   +   + + K    V  +     ++FL++   G +GS
Sbjct: 74  LAWTVFLQMLRNTIDTARSSSSTIGNGSGSSKFRPSVEQLARMGWVAFLIVSSDGTAGS 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,352,502
Number of Sequences: 37544
Number of extensions: 477407
Number of successful extensions: 1046
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)