Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30957
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               166   2e-41
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         148   6e-36
SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)                    31   1.4  
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         29   5.5  
SB_26124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   9.6  
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)                     28   9.6  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  166 bits (404), Expect = 2e-41
 Identities = 83/170 (48%), Positives = 101/170 (59%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
           VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW              W D+ G+KSI
Sbjct: 86  VGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSI 145

Query: 436 EKDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPS-RTK*NGPENIWEKPI 612
           E+DF  M +YC V+RVI HTQ KL    +++  + +  +        K +      E P 
Sbjct: 146 EEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPA 205

Query: 613 PVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
           PV  VF+ DEMID I             RW TKKLPRKTHKGLRKVACIG
Sbjct: 206 PVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIG 255



 Score =  148 bits (358), Expect = 6e-36
 Identities = 64/85 (75%), Positives = 77/85 (90%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 1   SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           +PGSK+NKKE VEAVTIIETPPM++
Sbjct: 61  KPGSKLNKKEKVEAVTIIETPPMMV 85


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  148 bits (358), Expect = 6e-36
 Identities = 64/85 (75%), Positives = 77/85 (90%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 49  SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 108

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           +PGSK+NKKE VEAVTIIETPPM++
Sbjct: 109 KPGSKLNKKEKVEAVTIIETPPMMV 133



 Score =  111 bits (267), Expect = 6e-25
 Identities = 47/81 (58%), Positives = 57/81 (70%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
           VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW              W D+ G+KSI
Sbjct: 134 VGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSI 193

Query: 436 EKDFKKMIRYCSVVRVIAHTQ 498
           E+DF  M +YC V+RVI HTQ
Sbjct: 194 EEDFNTMKKYCKVIRVICHTQ 214


>SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)
          Length = 173

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
 Frame = +1

Query: 196 NQQERDRGGCHHHRDSSDGFVGVVGYIETPHGLR-ALLTVWAEHMSEDCRRRFYKNWYXX 372
           ++ +R     H  R  S G +G  G I TP G+R A +T W          + Y+N Y  
Sbjct: 74  SEDDRSSSSSHVLRSESSGSLGGSGQI-TPSGVRRAQVTSWLRSQPSYTFHKPYRNRYPR 132

Query: 373 XXXXXXXXXXXWQDEL 420
                      WQ +L
Sbjct: 133 QRVVVNGMDKQWQADL 148


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
 Frame = +2

Query: 8   RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKP-----VHLTAFIGYKAGMTHVV 169
           R+F  P+ G +G Y ++  R H GK +   PK +P +      + +  F G K  +T  +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAYQGFISIIFFKGVKT-LTRSL 203

Query: 170 REPDRPGSKINKKEIVEAVTIIETPPMVLSVLL 268
            +  R  S+ + +  ++     + PP  L  +L
Sbjct: 204 NKRKRRPSRKDMRAGMKPYEAKKAPPFSLEDML 236


>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 247 DGFVGVVGYIETPHGLRALLTVW 315
           DGFVG  GY+   HGL  +L ++
Sbjct: 896 DGFVGSHGYLNVSHGLDVMLDLY 918


>SB_26124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 520 KRRLTLWKSNLTVVPSRTK*NGPENIWEKPIPVDSVFAQDE 642
           K RL    S   VV  R K     ++W++P+PV+ V + DE
Sbjct: 11  KERLCCGLSIFEVVLRRIKSFLTSDLWKEPVPVNGVMSIDE 51


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 289  HEGSQCIQQHRQNHRRSLDDGDSLHDLFLVDF*T-GTVRFSNHVGHTGLITDKSSQMNRF 113
            H  SQ  ++HR  HR +   GD +H++ + D       R+S       LI+ +S+Q  R 
Sbjct: 1032 HNNSQKWREHRMRHRLTNLSGD-VHEMVMYDTTRFNATRYSGTCDIRHLISTRSTQRFRI 1090

Query: 112  ARVVFRERL 86
               +   R+
Sbjct: 1091 RHDMTHHRI 1099


>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 718

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 519 VAVLQLHLSVGNDSYNTTVADHLLEIFFY 433
           V ++   +   NDSYN T+ D + E+F Y
Sbjct: 518 VDIVSKEVCNANDSYNGTINDRVPEVFLY 546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,532,273
Number of Sequences: 59808
Number of extensions: 550994
Number of successful extensions: 1206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)