Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30957
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 176 2e-44
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 176 2e-44
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 176 2e-44
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 176 2e-44
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 161 7e-40
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 161 7e-40
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 122 3e-28
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 122 3e-28
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 33 0.30
U41264-11|AAA82431.2| 550|Caenorhabditis elegans Hypothetical p... 28 8.5
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 176 bits (428), Expect = 2e-44
Identities = 86/168 (51%), Positives = 104/168 (61%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 438
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 439 KDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPIPV 618
DF K+ +YCS +RVIAHTQMK+ +++ L + + K + EK + V
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQV 207
Query: 619 DSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
D+VFAQDEMID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 208 DTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 255
Score = 161 bits (390), Expect = 7e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 176 bits (428), Expect = 2e-44
Identities = 86/168 (51%), Positives = 104/168 (61%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 438
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 439 KDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPIPV 618
DF K+ +YCS +RVIAHTQMK+ +++ L + + K + EK + V
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQV 207
Query: 619 DSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
D+VFAQDEMID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 208 DTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 255
Score = 161 bits (390), Expect = 7e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 176 bits (428), Expect = 2e-44
Identities = 86/168 (51%), Positives = 104/168 (61%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 438
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 439 KDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPIPV 618
DF K+ +YCS +RVIAHTQMK+ +++ L + + K + EK + V
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQV 207
Query: 619 DSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
D+VFAQDEMID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 208 DTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 255
Score = 161 bits (390), Expect = 7e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 176 bits (428), Expect = 2e-44
Identities = 86/168 (51%), Positives = 104/168 (61%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 438
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 439 KDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPIPV 618
DF K+ +YCS +RVIAHTQMK+ +++ L + + K + EK + V
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQV 207
Query: 619 DSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
D+VFAQDEMID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 208 DTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 255
Score = 161 bits (390), Expect = 7e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 161 bits (390), Expect = 7e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 106 bits (254), Expect = 2e-23
Identities = 46/81 (56%), Positives = 55/81 (67%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 438
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 439 KDFKKMIRYCSVVRVIAHTQM 501
DF K+ +YCS +RVIAHTQM
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQM 168
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/46 (63%), Positives = 30/46 (65%)
Frame = +1
Query: 625 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
V A +MID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 207
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 161 bits (390), Expect = 7e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 106 bits (254), Expect = 2e-23
Identities = 46/81 (56%), Positives = 55/81 (67%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 438
GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K IE
Sbjct: 88 GVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIE 147
Query: 439 KDFKKMIRYCSVVRVIAHTQM 501
DF K+ +YCS +RVIAHTQM
Sbjct: 148 ADFAKLKKYCSSIRVIAHTQM 168
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/46 (63%), Positives = 30/46 (65%)
Frame = +1
Query: 625 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
V A +MID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 207
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 122 bits (294), Expect = 3e-28
Identities = 62/119 (52%), Positives = 75/119 (63%)
Frame = +1
Query: 406 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NG 585
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+ +++ L + + K +
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 586 PENIWEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
EK + VD+VFAQDEMID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 157
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 100
SHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 122 bits (294), Expect = 3e-28
Identities = 62/119 (52%), Positives = 75/119 (63%)
Frame = +1
Query: 406 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKL*NSDKRRLTLWKSNLTVVPSRTK*NG 585
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+ +++ L + + K +
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 586 PENIWEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
EK + VD+VFAQDEMID I SRWHTKKLPRKTHKGLRKVACIG
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIG 157
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 100
SHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 247 DGFVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 366
+G+ + GY++ G+R VW E S+ + KNW+
Sbjct: 204 NGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>U41264-11|AAA82431.2| 550|Caenorhabditis elegans Hypothetical
protein F10E7.1 protein.
Length = 550
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 498 NEAVKQRQKKAHIMEIQLNGGTIEDKVKWAREHLGETYPCRFC 626
NEAV + +K H E+ L+ D E++G Y CR+C
Sbjct: 85 NEAVLHKIRKDH-REVVLHTAYHCDVADEYTEYMGTDYECRYC 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,042
Number of Sequences: 27780
Number of extensions: 404632
Number of successful extensions: 1064
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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