Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30957
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 231 MVTASTISFLLIFEPGRSGSLTTWVI 154
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 344 RRQSSDICSAQTVKRARSP*GVSMYPTTPTKPSEESR 234
           RR+SS IC    V  + S    SM  +  +KPS   R
Sbjct: 379 RRRSSLICDVYGVNESVSYERGSMTVSVTSKPSTMER 415


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 264 CWIH*DPSWTTRSFDCLG 317
           C  + D +W T + DC G
Sbjct: 765 CKCYNDRTWNTNAVDCSG 782


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 422 PSSSCHFLLALVKAFFLHL 366
           P+ S H+LLAL+   F  L
Sbjct: 43  PNPSLHYLLALLYILFTFL 61


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 242  PPMVLSVLLDTLRPLMDYAL 301
            PP+  + L+D L+P   Y +
Sbjct: 961  PPLPYAALIDELKPATRYTI 980


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 242  PPMVLSVLLDTLRPLMDYAL 301
            PP+  + L+D L+P   Y +
Sbjct: 957  PPLPYAALIDELKPATRYTI 976


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,451
Number of Sequences: 438
Number of extensions: 4459
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)