Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30957
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   153   9e-38
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   145   3e-35
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   145   3e-35
At1g29195.1 68414.m03572 expressed protein                             30   1.5  
At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar...    30   1.9  
At5g11270.1 68418.m01316 expressed protein                             29   2.6  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  153 bits (372), Expect = 9e-38
 Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
           VGVVGY++TP GLR+L TVWA+H+SE+ RRRFYKNW               + E G+K I
Sbjct: 87  VGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDI 146

Query: 436 EKDFKKMIRYCSVVRVIAHTQM-KL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPI 612
           +   +KM +YCSV+RV+AHTQ+ K+    +++  L +  +       K +   +++EK +
Sbjct: 147 QSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQV 206

Query: 613 PVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
           PVD++F +DEMID I            +RW   +LPRKTH+GLRKVACIG
Sbjct: 207 PVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256



 Score =  147 bits (357), Expect = 6e-36
 Identities = 63/85 (74%), Positives = 76/85 (89%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+ +
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVE 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           +PGSK++KKE  EAVTIIETPPMV+
Sbjct: 62  KPGSKLHKKETCEAVTIIETPPMVV 86


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  145 bits (351), Expect = 3e-35
 Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
           VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW              +  E G+K I
Sbjct: 87  VGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGI 146

Query: 436 EKDFKKMIRYCSVVRVIAHTQM-KL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPI 612
           +   +KM +Y +V+RV+AHTQ+ K+    +++  + +  +       K +   + +EK I
Sbjct: 147 QAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206

Query: 613 PVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
           P+++VF +DEMID I            +RW   +LPRKTH+GLRKVACIG
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256



 Score =  141 bits (342), Expect = 4e-34
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE +
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           +PGSK++KKE  EAVTIIETP MV+
Sbjct: 62  KPGSKLHKKETCEAVTIIETPAMVV 86


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  145 bits (351), Expect = 3e-35
 Identities = 71/170 (41%), Positives = 103/170 (60%), Gaps = 1/170 (0%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSI 435
           VGVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW              +  E G+K I
Sbjct: 87  VGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGI 146

Query: 436 EKDFKKMIRYCSVVRVIAHTQM-KL*NSDKRRLTLWKSNLTVVPSRTK*NGPENIWEKPI 612
           +   +KM +Y +V+RV+AHTQ+ K+    +++  + +  +       K +   + +EK I
Sbjct: 147 QAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQI 206

Query: 613 PVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTHKGLRKVACIG 762
           P+++VF +DEMID I            +RW   +LPRKTH+GLRKVACIG
Sbjct: 207 PIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIG 256



 Score =  141 bits (342), Expect = 4e-34
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE +
Sbjct: 2   SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           +PGSK++KKE  EAVTIIETP MV+
Sbjct: 62  KPGSKLHKKETCEAVTIIETPAMVV 86


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 125 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 247
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 390

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -3

Query: 370 ICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLFLVD 197
           ICT+ C SDV   +   PP      + HE    ++   +N +  + +GD++   F+ D
Sbjct: 51  ICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVV-EGDTVLPTFMPD 107


>At5g11270.1 68418.m01316 expressed protein 
          Length = 354

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 586 PENIWEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPRKTH-KGLRKV 750
           PEN    P PV+S+ A+D +++               RW  +K  +K H + L KV
Sbjct: 249 PENSSPDPSPVESLSAEDVVVEPKEKVKDEAVHVMQQRWSAQKRVKKAHIETLEKV 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,808,407
Number of Sequences: 28952
Number of extensions: 377892
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)