Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30955
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    31   0.16 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   2.7  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    27   4.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   6.2  

>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = +3

Query: 33  VGKWSPDPKTNSAWKAQYN-KLCSMCEHPERCDYPD-EFSGYVGA--LKCLAHNNGQVAF 200
           V  +  DPK+  ++K  Y   L S+      C+  D EF+  V    L+ L  NN +   
Sbjct: 372 VYNYQEDPKSTLSFKKNYTPNLSSLKLCMVECEVVDPEFNIIVSDRWLQPLGTNNSKEVI 431

Query: 201 TKVIFTRKFFGLPV 242
           T ++  RKF G+P+
Sbjct: 432 TPILCLRKFGGIPI 445


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 162 LKCLAHNNGQVAFTKVIFTR-KFFG 233
           LKC+ H  GQV   KVI  R KF G
Sbjct: 533 LKCIDHKRGQVVAIKVIKNRQKFHG 557


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 45  SPDPKTNSAWKAQYNKLCSMCEHPE 119
           +PDPKT S    +YN  C   +HPE
Sbjct: 90  TPDPKTESPSFVKYNAHCD--DHPE 112


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 193 SPSPKSYSPGNSSDCPSVPLH*SFKREP 276
           +PS ++Y P    +C SVP + S+ R P
Sbjct: 559 TPSQQAYFPDAPHNCHSVPQNSSYPRPP 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,935,272
Number of Sequences: 5004
Number of extensions: 86873
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)