Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30955
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 30 2.8
03_06_0286 - 32852447-32852731,32853523-32853615,32853692-328538... 30 2.8
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 29 3.7
06_03_0502 + 21493442-21494341 29 3.7
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502... 29 6.5
04_03_0664 + 18501248-18502802,18503370-18505054 29 6.5
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 28 8.6
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652... 28 8.6
03_01_0560 + 4162206-4162607 28 8.6
>03_06_0642 + 35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 29.9 bits (64), Expect = 2.8
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Frame = +2
Query: 212 IHQEILRIARRYHSTSPSNENPDEYRYLCVDGSKVPIRDKACSWAARPWQGLIGHNDVLA 391
+H+E + RR+ + P E+ D L + + D A +R L+ D+ A
Sbjct: 718 VHREGNAVIRRHLESLPL-ESFDSILILADES----VEDSAIQADSRSLATLLLIRDIQA 772
Query: 392 KLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVADIF--RSKRL 529
K P RE + GS + W ++ SDK +++I R+K L
Sbjct: 773 KRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRTKNL 820
>03_06_0286 -
32852447-32852731,32853523-32853615,32853692-32853860,
32854467-32854715,32854792-32854940,32855511-32855699,
32856027-32856272,32856431-32856438,32857083-32857206
Length = 503
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 656 AFSRDIRPILDCVQEASETDCLKKRSRQWLRFWHSVDDLRVTLQQPRKYVFAPG 817
A S D RP++ A ET S +W HS DD+ + +PR Y+ A G
Sbjct: 34 AASSDNRPVISVTLSAGETSS-NGDSERWQTRQHSTDDISRSKSKPR-YIKAFG 85
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 299 VDGSKVPIRDKACSWAARPWQGLIGHNDVLAKLSP 403
VD + PI D A + A PW GH D + LSP
Sbjct: 584 VDNTGSPIVDAASNTTATPWSIGAGHVDPVKALSP 618
>06_03_0502 + 21493442-21494341
Length = 299
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +1
Query: 97 ALCANIQRDATIPTNSAATWAH*SVWLTTTDKSPSPKSYSPGNSSDCPSV 246
A A ++R+A A T VWL D+ P P+ + D P +
Sbjct: 192 AAAAEVEREAVEARRPATTREPPRVWLRVADEDPEPEEFDDEADDDEPEM 241
>11_06_0197 +
21149453-21149630,21149930-21149996,21150142-21150244,
21150901-21150971,21151091-21151154,21151239-21151304,
21151416-21151463,21151544-21151606,21151680-21151736,
21151884-21151950,21151969-21152042,21152176-21152244,
21152323-21152414,21152782-21152860,21153233-21153398,
21153826-21153950,21154089-21154351,21154473-21154569,
21154659-21154820,21154904-21155008,21155935-21156180
Length = 753
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 530 SIALIGICRPRSGFCLIALELW 465
SIA G+ R GFCL AL++W
Sbjct: 250 SIAPGGLAADRRGFCLSALQIW 271
>04_03_0664 + 18501248-18502802,18503370-18505054
Length = 1079
Score = 28.7 bits (61), Expect = 6.5
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Frame = +2
Query: 167 VSGSQQRTSRLHQSHIHQEILRIARRYHSTSPSNENPDEYRYLCVDGSKVPIRDKACSWA 346
V G + ++ RL H +++L I R+ + NPD+Y L G K+ + C A
Sbjct: 341 VLGGRTKSLRLEGLH-DKDLLAIFNRH---AFFEVNPDDYFNLQEIGKKITRKLSGCPLA 396
Query: 347 ARPWQGLIGHN-DVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVA 505
A+ GL+ ++ D + LRE I + + E K+L LS H++A
Sbjct: 397 AKIMGGLLNNSLDSIYWNRMLRENISNI-----EHNSEGIMKILRLS--YHHLA 443
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = +2
Query: 236 ARRYHSTSPSNENPDEYRYLCVDGSKVPI-----RDKACSWAARPWQGLIGHNDVLAKLS 400
A Y+S PS+ + Y G P RD +W P GL+G+ D + +
Sbjct: 231 ANPYNSQPPSSGSSSTLNYGSQYGGFEPSLTDFPRDAGPTWCPDPVDGLLGYTDDVPAGN 290
Query: 401 PLREKIKQLADAGSKSQPEWF 463
L E A Q EW+
Sbjct: 291 NLTENSSIAAGDELAKQSEWW 311
>03_02_0218 -
6522330-6522458,6523257-6523328,6523555-6523707,
6524370-6524543,6525655-6525835,6525923-6525990
Length = 258
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 78 AQYNKLCSMCEHPERCDYPDEFSGYVGALKCLAHNN 185
A+Y L S+ +H +P + V AL CLA NN
Sbjct: 39 AKYLALLSLLDHKHLSFWPSTVAAAVVALACLATNN 74
>03_01_0560 + 4162206-4162607
Length = 133
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 466 GEPLGLAFGTGISQLLYFLP 407
G P G AFG G++ LL+ LP
Sbjct: 20 GAPAGAAFGLGLAGLLFLLP 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,266,170
Number of Sequences: 37544
Number of extensions: 599776
Number of successful extensions: 1571
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1568
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -