Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30955
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           40   0.004
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    34   0.18 
SB_58046| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_33581| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)            29   6.6  
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)            29   6.6  
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)            29   6.6  
SB_26633| Best HMM Match : BacA (HMM E-Value=0.91)                     29   6.6  
SB_9947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2)              29   6.6  
SB_7466| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = +3

Query: 12  FFTKSCIVGKWSPDPKTNSAWKAQYNKLCSMCEHPERC--DYPDEFSGYVGALKCLAHNN 185
           FF KSC+ G +      N+    +   LC  C +P  C  D  + + GY G+  CL    
Sbjct: 174 FFGKSCVPGVFDAANNLNNT---KLPSLCGACSNPT-CPGDESERYYGYNGSYVCLVEGR 229

Query: 186 GQVAFTK 206
           G+VAF +
Sbjct: 230 GEVAFVR 236


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +2

Query: 209 HIHQEILRIARRYHSTSPSNENP-DEYRYLCVDGSKVPIRDKACSWAARPW----QGLIG 373
           + H E L I  + H ++   E     YR+LC  G  +P+R ++  +   PW    + L+ 
Sbjct: 113 YFHPEDLEIVAQSHKSALQGETAVSSYRFLCKSGHYIPLRTRSTLF-RNPWTKEIEFLVC 171

Query: 374 HNDVLAK 394
            NDVL +
Sbjct: 172 TNDVLTE 178


>SB_58046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 338 SWAARPWQGLIGHNDVLAKLSPLREKIKQLADAGSKSQP 454
           +W+A  W GL      + K++  R+ +K+ +D   +S P
Sbjct: 24  TWSAGSWMGLSDQRQTVKKVTDYRQNMKKTSDYRPRSSP 62


>SB_33581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 347 ARPWQGLIGHNDVLAKLSPLREKIKQLADAGSKSQP 454
           ++P  GL  H D   KL   ++K KQ  D G+K  P
Sbjct: 284 SKPHIGLSAHGDNNCKLQDRQDKYKQAFDKGAKGLP 319


>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = +1

Query: 121  DATIPTNSAATWAH*SVWLTTTDKSPSPKSYSPGNSSDCPSVPLH 255
            D  +P N    W      L +  K   P+ Y P N  D  S  LH
Sbjct: 914  DEKVPENVCTAWEPWKTDLHSLSKLKIPRCYKPPNFGDIASAELH 958


>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
          Length = 306

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/71 (28%), Positives = 36/71 (50%)
 Frame = -1

Query: 477 PRTLVNHSGWLLEPASANCFIFSLSGLSLARTSLCPISPCHGLAAQEQALSLIGTLEPST 298
           P  L+ ++ + + P+   C +F+LS LSL      P+S    LA   + +SL+  L    
Sbjct: 226 PGILLKNTAYQIAPSL--CRLFNLS-LSLGPVPALPVSDDPTLAENYRPISLLCILSKVL 282

Query: 297 QRYLYSSGFSF 265
           +R ++   F+F
Sbjct: 283 ERCVFKHCFNF 293


>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 51  DPKTNSAWKAQYNKLCSMCEHPERCD--YPDEFSGYVGALKCLAHNNGQVAFTK 206
           D  T+  WKA+ N    + +  +R D     EFS Y+G +K +  +N  VA  K
Sbjct: 14  DRLTHKVWKARVNGYEELVQIFKRTDDETSSEFSKYLGFMKKMVVDNNAVAQDK 67


>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 194 RLHQSHIHQEILRIARRYHSTSPSNENPDEYRYLCVDGSK 313
           RLH   I+  +  I  + HS+SPS +  + Y  L V  S+
Sbjct: 120 RLHIKQIYTNLELITTKQHSSSPSRKPLNSYEELFVTSSR 159


>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
          Length = 854

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +2

Query: 353 PWQGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVADIFRSKRL 529
           P+Q       +L +LSP R K+K++    S+S    FT V+ ++D    + + F S+ L
Sbjct: 614 PFQKTTWVQPLLMELSPWRSKLKEIEKKQSQSSLGNFTDVVFVADFPGLMLENFMSEEL 672


>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
          Length = 1682

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +1

Query: 37  VNGLRIRK---QTRLGRPNTTSYALCANIQRDATIPTNSAATWAH*SVWLTTTDKSPSPK 207
           ++ LR RK   ++++G+PN  S      ++R + + T S         WL++ +KSP+ K
Sbjct: 164 LDSLRSRKAPFKSKIGQPNVISGP--TPLERRSQLNTLSGTLGIKVEGWLSSPEKSPTKK 221

Query: 208 SYS 216
            +S
Sbjct: 222 EFS 224


>SB_26633| Best HMM Match : BacA (HMM E-Value=0.91)
          Length = 660

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 166 SVWLTTTDKSPSPKSYSPGNSSDCPSVPLH*SFKREP 276
           SVWL+   K    KS+  G S+    +P+  SFK+EP
Sbjct: 79  SVWLSVATKD---KSFKKGLSAGLGLIPIGKSFKKEP 112


>SB_9947| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2)
          Length = 405

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 543 LVQIVNRFDRNMSAT*WILSDSPRTLVN-HSGWLLEPASANCFIFSL 406
           L QI+N   R+     W L++ P+++VN H  ++++ A+   +   L
Sbjct: 225 LTQIINVLTRDTGILDWCLTNKPKSIVNKHVDYVVKKANKRLYALRL 271


>SB_7466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 176 SQQRTSRLHQSHIHQEILRIAR 241
           ++Q  + LHQSHIH ++L + R
Sbjct: 64  TKQSVASLHQSHIHHKVLEMVR 85


>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4924

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 248 HSTSPSNENPDEYRYLCVDG 307
           ++T  S + PDEYR +C DG
Sbjct: 196 NATCESGDGPDEYRCICKDG 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,322,581
Number of Sequences: 59808
Number of extensions: 695462
Number of successful extensions: 2009
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2009
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)