Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30955
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical...    32   0.47 
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    31   1.1  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    31   1.1  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    31   1.4  
AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical...    31   1.4  
Z81125-9|CAL64006.1|  112|Caenorhabditis elegans Hypothetical pr...    30   2.5  
EF035034-1|ABK34454.1|  112|Caenorhabditis elegans heat-shock pr...    30   2.5  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    28   7.7  

>AL132860-29|CAB60505.2|  386|Caenorhabditis elegans Hypothetical
           protein Y56A3A.28 protein.
          Length = 386

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -3

Query: 421 LYFLPQRAKFSQNVVMSDQSLPRSSCPRAGLVPYRHFRTVHAEI 290
           L F+P            D S P+  CP  GLV YRH    H  I
Sbjct: 187 LSFIPSGTVVGAPANQDDGSKPKMECPTCGLVLYRHNFAAHFRI 230


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 825 VEDPGAKTY-FLGCCKVTLKSSTECQNRSHCLERFLRQSVSEAS*TQSRM 679
           +E  G KT+  + C  +TLKS+T       CL R L  S +EA+  Q R+
Sbjct: 841 IECEGCKTWQHMACMGLTLKSNTSKYKCEMCLPRRLPVSKAEAAREQERI 890


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
           protein F15E6.1 protein.
          Length = 1655

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 825 VEDPGAKTY-FLGCCKVTLKSSTECQNRSHCLERFLRQSVSEAS*TQSRM 679
           +E  G KT+  + C  +TLKS+T       CL R L  S +EA+  Q R+
Sbjct: 833 IECEGCKTWQHMACMGLTLKSNTSKYKCEMCLPRRLPVSKAEAAREQERI 882


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 79  PNTTSYALCANIQRDATIPTNSAATWAH*SVWLTTTDKSPSPKSYSPGNSSDCPS 243
           P T++    ++     T PT++ +T    S  +TT+  +PS  +  P +SS  PS
Sbjct: 457 PVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 79  PNTTSYALCANIQRDATIPTNSAATWAH*SVWLTTTDKSPSPKSYSPGNSSDCPS 243
           P T++    ++     T PT++ +T    S  +TT+  +PS  +  P +SS  PS
Sbjct: 457 PVTSTVTSSSSSSTTVTTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511


>AC006608-10|AAF39754.1|  801|Caenorhabditis elegans Hypothetical
           protein C15F1.2 protein.
          Length = 801

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 648 PCSRSVETSDPSWIVFKRLQKPTALKSVQDNGSDFGIQ 761
           P  +  E S  S +VF+ +  PT+   V DNG  F IQ
Sbjct: 484 PICQETEESMNSTVVFESIDDPTSTMLVDDNGDKFIIQ 521


>Z81125-9|CAL64006.1|  112|Caenorhabditis elegans Hypothetical
           protein T22A3.2b protein.
          Length = 112

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 344 AARPWQGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVADIFRSK 523
           +A  W   + HND + K++   EK +   DAG     +   KV G+   IH   D+ +++
Sbjct: 10  SAASWDWPLQHNDGVVKVTNTSEKFEVGLDAGFFGPNDIDVKVNGIEIIIHLRHDLLQNR 69


>EF035034-1|ABK34454.1|  112|Caenorhabditis elegans heat-shock
           protein 12.1 protein.
          Length = 112

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +2

Query: 344 AARPWQGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVADIFRSK 523
           +A  W   + HND + K++   EK +   DAG     +   KV G+   IH   D+ +++
Sbjct: 10  SAASWDWPLQHNDGVVKVTNTSEKFEVGLDAGFFGPNDIDVKVNGIEIIIHLRHDLLQNR 69


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 409  PQRAKFSQNVVMSDQSLPRSSCPRAGLVPYRHFRT 305
            P+  +  ++V M   S P S+CP  G +P+   RT
Sbjct: 1308 PEGEEAVEDVCMKKMSRPMSTCPIPGQIPFLELRT 1342


>Z81453-3|CAB03791.1|  480|Caenorhabditis elegans Hypothetical
           protein B0250.4 protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 57  KTNSAWKAQYNKLCSMCE 110
           KTN+ W   YNK CS  E
Sbjct: 173 KTNTVWNKNYNKFCSFKE 190


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
            F26A3.3 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +2

Query: 542  RANYTEVIERG-HGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASETDC 718
            R  + E  E G  G  E   R    SN+   +CRA +V    + +     C +EA  T  
Sbjct: 1226 REIFFEEFEGGWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACYEEARITRE 1285

Query: 719  LKKRSRQWLRF 751
             KK S  WL +
Sbjct: 1286 NKKLSFAWLAY 1296


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
            polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +2

Query: 542  RANYTEVIERG-HGAPELVVRLCVTSNVALAKCRAMSVFAFSRDIRPILDCVQEASETDC 718
            R  + E  E G  G  E   R    SN+   +CRA +V    + +     C +EA  T  
Sbjct: 1226 REIFFEEFEGGWEGNTEAFSRYGRDSNILQRQCRAPTVQMMKKAVAWYRACYEEARITRE 1285

Query: 719  LKKRSRQWLRF 751
             KK S  WL +
Sbjct: 1286 NKKLSFAWLAY 1296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,958,487
Number of Sequences: 27780
Number of extensions: 496930
Number of successful extensions: 1315
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)