Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30955
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43245.1 68414.m04985 expressed protein                             32   0.58 
At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein si...    29   4.1  
At4g38300.1 68417.m05412 glycosyl hydrolase family 10 protein si...    29   4.1  
At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative (CH...    28   7.2  
At2g04100.1 68415.m00393 MATE efflux family protein similar to r...    28   7.2  
At1g61550.1 68414.m06934 S-locus protein kinase, putative simila...    28   7.2  

>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = +2

Query: 581 APELVVRLCVTSNVALAKCRAMSVFAFSRDI----RPILDCVQEASE-TDCLKKRSRQWL 745
           AP+L++ L V S+V   KC  +      RDI    R IL CV++ S+ T     R   +L
Sbjct: 439 APKLLMELSVESDVKCTKCLMLETSNSHRDIKEKSRQILSCVRDISQVTWSFLTRGCPYL 498

Query: 746 RFWHSVDDLRVT 781
             + S  D  +T
Sbjct: 499 EKFRSPVDFSLT 510


>At4g38650.1 68417.m05471 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 562

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 568 FNDFGVVGPCSNSQSL*SEYVGHV 497
           FNDF VV  CS+ +S   EY+  V
Sbjct: 370 FNDFNVVETCSDEKSTVDEYIARV 393


>At4g38300.1 68417.m05412 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 277

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 568 FNDFGVVGPCSNSQSL*SEYVGHV 497
           FNDF VV  CS+ +S   EY+  V
Sbjct: 182 FNDFNVVETCSDEKSTVDEYIARV 205


>At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative
           (CHX24) similar to Na+/H+-exchanging protein NapA -
           Enterococcus hirae, PIR:A42111; monovalent cation:proton
           antiporter family 2 (CPA2) member, PMID:11500563
          Length = 859

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -1

Query: 495 WILSDSPR-TLVNHSG--WLLEPASANCFIFSLSGLSLA 388
           WI+S +P  TLVN +    +L    A+CF+  + GLS+A
Sbjct: 284 WIVSQTPEGTLVNQNYIVMILMGVLASCFLTDMFGLSIA 322


>At2g04100.1 68415.m00393 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 483

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 811 CKDVFSWLLQGYPQVVD*MPKSEPLS*TLFKAVGF*SLLNTIQDGS 674
           C+D+F +      +VVD + +  PL    F   GF ++L  +  GS
Sbjct: 355 CRDIFGYAFSNSKEVVDYVTELSPLLCISFLVDGFSAVLGGVARGS 400


>At1g61550.1 68414.m06934 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 802

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 423 CFIFSLSGLSLARTSLCPISPCH--GLAAQEQALSLIGTLEPSTQRYLYSSGFSFEGLV 253
           CF+FS   LS +  ++ P SP       +    +  +G   P+  R LY  G  F+G++
Sbjct: 6   CFLFSTLLLSFSYAAITPTSPLSIGQTLSSPNGIFELGFFSPNNSRNLY-VGIWFKGII 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,909,922
Number of Sequences: 28952
Number of extensions: 472841
Number of successful extensions: 1375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)