Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30954
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   1.2  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    27   1.6  
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    27   2.1  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    26   3.7  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   6.4  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    25   8.4  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    25   8.4  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   8.4  

>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +2

Query: 164 RLHGSVQPVPAGSPRESHCCTLRARDDYNSNVSPAVKLVTNYTKNYQPAEDV 319
           R H     + A +  + H C +R      SN SP++  +TN  KNY P+ DV
Sbjct: 454 RTHLVSPAMAAAAAIKGHLCNVREFFGDVSNGSPSI--ITN--KNYDPSHDV 501


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 248 NSNVSPAVKLVTNYTKNYQPAEDVLVPA 331
           N N+S A   +TNYT N  P+  V  PA
Sbjct: 668 NGNISGAKTPMTNYTINSMPSLPVFPPA 695


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +1

Query: 232 CPGRLQFKRLASRQTCHQ-----LYEELSAGRGRAGPC*VHS 342
           CP + +F  +A R+ C +     +Y+E+  G GR+G    HS
Sbjct: 239 CPAKPEFL-IALRKACDKVGASLIYDEIQCGLGRSGDLWAHS 279


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 161 HRLHGSVQPVPAGSPRESHCCTLRARDDYN 250
           H+ HGSV  +P+   R S       + DYN
Sbjct: 604 HKKHGSVDHLPSVKRRRSIANDFHGKPDYN 633


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -1

Query: 73  DSDASLRRFTRSKREVSF-SSAES 5
           DS   LRR +RSK+ V++ SS+ES
Sbjct: 133 DSSTHLRRSSRSKKPVNYNSSSES 156


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 200 ILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTCGRGRHVVLT 78
           + P +++  +VTG+T         Y  A   C +G H++ T
Sbjct: 584 VQPSQILGNYVTGITFMNKVDYATYFSAEEYCKQGIHMIPT 624


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 120 ENVLIVCARW-KEGHTG-YMAVYNPSRQDLHANLTAVPSVPGTITIQTSRQPSNLSPTIR 293
           E  L  C  W K  H   Y  +Y    QDL  +L    +V GT       QP+ L+   +
Sbjct: 28  EGTLKKCKEWLKSSHPDVYDKLYG--EQDLSKDLENTLNVSGTKDSNAEEQPAKLTKEEK 85

Query: 294 R 296
           R
Sbjct: 86  R 86


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 453 NIV*KQNHCKMQTNCFTLTIYSSFSRFSCFIGT*DTTTVDLAGTS 319
           N V  +NH      CF L +YS    +S F+    T T + A  S
Sbjct: 132 NCVGFRNHKFFFLECFYLNLYSICVLYSTFVAITKTFTAEGANIS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,062,748
Number of Sequences: 5004
Number of extensions: 42199
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)