Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30954
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0118 - 871481-872606,872795-872950,873051-873817 33 0.13
01_06_0310 - 28376378-28376607,28376789-28376897 31 0.39
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 30 1.2
01_01_0099 - 751627-752126,752866-753056,753188-753945 30 1.2
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 29 1.6
01_01_0115 - 856957-858055,858479-858538,858802-859583 29 1.6
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77... 29 1.6
01_01_0097 - 741881-742977,743100-743320,743438-744156 29 1.6
01_01_0116 - 861044-861405,861495-861633,862078-862501,862634-86... 29 2.1
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 29 2.8
01_01_0112 - 838809-839748,839781-839908,840203-840274,840306-84... 29 2.8
09_03_0210 - 13509814-13510965 28 3.7
02_01_0698 + 5216899-5217057,5217707-5218060 28 3.7
02_04_0037 + 19104367-19104978 28 4.8
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 27 6.4
07_03_0039 - 12718972-12720699 27 6.4
01_05_0669 - 24152057-24152110,24152224-24152308,24152401-241524... 27 6.4
11_01_0560 - 4413174-4414469 27 8.5
07_01_0601 + 4464745-4465010,4465274-4466582 27 8.5
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 27 8.5
>01_01_0118 - 871481-872606,872795-872950,873051-873817
Length = 682
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTCGRGRHV 87
G GGY S + +LPG +H + + + +C +E++ T GR HV
Sbjct: 366 GQGGYGSVYKGVLLPGD-LHVAIKILNGYSNCNGEEFISEVATIGRIHHV 414
>01_06_0310 - 28376378-28376607,28376789-28376897
Length = 112
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 48 NLRSDASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYNPSRQDLHA 209
+L + A+ H AA P R+ ++ W E GY+ VY+ +L A
Sbjct: 6 SLLAAAAADDARHAQAAGPRRDDDHKAWLLRRAWHEAREGYVVVYDGGGNELSA 59
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 52 SAATRRCRTVSTTWRPRP 105
SA++RR RT S+TW PRP
Sbjct: 59 SASSRRRRTPSSTWTPRP 76
>01_01_0099 - 751627-752126,752866-753056,753188-753945
Length = 482
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTCGRGRHV 87
G GGY S + +LPG VH V + + +C +E++ T GR HV
Sbjct: 324 GQGGYGSVYKGVLLPGD-VHVAVKVLGNY-NCNGEEFISEVSTIGRIHHV 371
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 6 LSADENDTSLLDLVNLRSDASLSHGEH-HVAAAPARNASENVLI 134
LS DEN + + + +DAS++H EH +VA A+ VL+
Sbjct: 435 LSMDENLQMIAKIAAVCNDASIAHSEHQYVATGMPTEAALKVLV 478
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPS-CTNDEYVLAGVTCGRGRHV 87
G GGY S + +LPG + HV L S C +E++ T GR H+
Sbjct: 339 GQGGYGSVYKGVLLPG---NAHVAVKVLGNSNCNGEEFISEVSTIGRIHHI 386
>01_01_0103 -
773727-774737,774797-774813,774852-775078,777465-778237
Length = 675
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTCGRGRHV 87
G GGY S + LPG VH + + +C ++++ T GR H+
Sbjct: 355 GQGGYGSVYKGVFLPGD-VHVAIKMLDGNSNCNGEDFISEVATIGRIHHI 403
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTCGRGRHV 87
G GGY S + ILPG VH + ++ + +C +E++ T G HV
Sbjct: 375 GQGGYGSVFKGVILPGD-VHVAIKMLSNY-NCNGEEFISEVSTIGSIHHV 422
>01_01_0116 -
861044-861405,861495-861633,862078-862501,862634-863131,
863217-863249,863490-863680,863828-864132,864196-864208
Length = 654
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTCGRGRHV 87
G GGY S + +LPG +H V + +C +E++ T G HV
Sbjct: 239 GQGGYGSVYKGVLLPGD-LHVAVKMLNGNSNCNGEEFISEVATIGMIHHV 287
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 248 CNRPGHGGYSSEIRVEILPGRVVHCHVTGVTL 153
CN G+GG+ + + CHVT +TL
Sbjct: 69 CNSGGNGGFGGTVNCDCSFYNHTFCHVTNITL 100
>01_01_0112 -
838809-839748,839781-839908,840203-840274,840306-840374,
840634-840698,840732-840907,841006-841757
Length = 733
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTCGRGRHV 87
G GGY S + +LPG +H V + + SC +E++ T G HV
Sbjct: 430 GQGGYGSVYKGVLLPGN-IHVAVKILANY-SCDGEEFINEVSTIGSIHHV 477
>09_03_0210 - 13509814-13510965
Length = 383
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 173 HVTGVTLFPSCTNDEYVLAGVTCGRGRHVVLTVRQRRVAAEVHQI 39
H T + SC +D A + C GRH L + + R+A +VH +
Sbjct: 71 HYTFEVVVASCDDDVARDAKICCATGRH--LALEKPRLALDVHLV 113
>02_01_0698 + 5216899-5217057,5217707-5218060
Length = 170
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 64 RRCRTVSTTWRPRPHVTPARTYSSFVQDGKRVTPVTWQCTTRPGRISTRI 213
+RC S + +PH T A+ YS F +V ++ C GR R+
Sbjct: 23 QRCEAESDQTKSQPHKTKAQKYSEFPTHKYKVISIS--CRPATGRRGRRV 70
>02_04_0037 + 19104367-19104978
Length = 203
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +1
Query: 160 TPVTWQCTTRPGRISTRISLLYPPCPGRLQFKRLASRQTCHQLYEELSAGRGRAGP 327
TPV + GR R LL PPC G Q + + + AG GR P
Sbjct: 93 TPVAF--APAKGRRRRRRCLLLPPCVGAKQAREMLREAAMMSPAPPVGAGGGRRSP 146
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 281 TNYTKNYQPAEDVLVPAKSTVVVSYVPIKHEKREKD 388
T+ T ++P E+ L+P ++T VS + I K+E D
Sbjct: 573 TDITDMWEPLEEGLLPLETTRHVSMITITLSKKELD 608
>07_03_0039 - 12718972-12720699
Length = 575
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 93 AAAPARNASENVLIVCARW-KEGHTGYMAVYNPSRQDLHANLTAVPSVPGTITIQTSRQP 269
AA PA A+ + + R H +A +P + LHA L +P+VP +++TS P
Sbjct: 35 AAVPAARAAVSEYLHATRCLPSSHADTIAARSP--RSLHAFLAGLPAVPS--SLRTSAFP 90
Query: 270 SNL 278
S L
Sbjct: 91 SLL 93
>01_05_0669 -
24152057-24152110,24152224-24152308,24152401-24152486,
24153129-24154341,24154441-24154529,24154607-24154639,
24154674-24154859,24155290-24155380,24155588-24155622,
24155736-24155817,24155968-24156020,24156404-24156469,
24156752-24156820,24156821-24156984,24157925-24158432,
24158543-24158602
Length = 957
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 126 RSRWRYVRARPPRGAHR 76
R RWR+ + RPPR A R
Sbjct: 175 RRRWRFTQHRPPRQAER 191
>11_01_0560 - 4413174-4414469
Length = 431
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 207 ANLTAVPSVPGTITIQTSRQPSNLSPTIRRTISRQRTCWSLLSPQSL 347
++L++ PS+ PS P RRT+ RQ WSL+ P L
Sbjct: 259 SSLSSPPSLSSVFPRIARVFPSRTKPRRRRTLRRQH--WSLICPLHL 303
>07_01_0601 + 4464745-4465010,4465274-4466582
Length = 524
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTND 132
GH E LPGR+ C VT V L + TN+
Sbjct: 265 GHAEQCLSRPQEPLPGRIFLCKVTDVRLGAAATNE 299
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 27.1 bits (57), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 174 PCNRCDPLSILHKR*VRSRWRYVRARPPRGA 82
P RC PL+++H V +R + +R P+ A
Sbjct: 39 PSERCQPLAVMHTVAVGARCLVMESRLPKAA 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,214,220
Number of Sequences: 37544
Number of extensions: 318544
Number of successful extensions: 1101
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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