Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30954
(502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47546| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29) 31 0.40
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 29 2.8
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 28 3.8
SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_29200| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_45629| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023) 27 8.7
>SB_47546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 31.5 bits (68), Expect = 0.40
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Frame = +3
Query: 108 RNASENVLIVCARWKEGHTGYMAVYN--PSRQDLHANLTAVP---SVPG----TITIQTS 260
R +E + ARW++G G +V N + AN P ++PG T T+ +
Sbjct: 74 RAKTEEAEVSQARWQQGCVGPTSVINLAVTGTPCGANALVEPLSTTLPGRLCVTATLVDA 133
Query: 261 RQPSNLSPTIRRTISRQRTCWSLLSP 338
+P+ +PT R ++RTC S + P
Sbjct: 134 SRPNFTNPTRRGVRLKKRTCLSSIQP 159
>SB_24152| Best HMM Match : PKD (HMM E-Value=4.1e-29)
Length = 1130
Score = 31.5 bits (68), Expect = 0.40
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 198 PAGTGCTLPCNRCDPLSIL 142
P GT CT+P N C P ++L
Sbjct: 344 PVGTSCTIPVNTCSPTNVL 362
>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +3
Query: 102 PARNASENVLIVCARWKEGHTG------YMAVYNPSRQDLHANLTAVP 227
P + + +V+ C + +G G Y+ VY+P +D+ A+ +VP
Sbjct: 136 PPKKIASDVMCACLAYNDGFQGVIILVDYLVVYSPGGEDMMAHPDSVP 183
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +1
Query: 52 SAATRRCRTVSTTWRPRPHVTPARTYSSFVQDGK-----RVTPVTWQCTTRPGR 198
S +T R R+ S T P TP+ T S GK + T T +CTTR R
Sbjct: 1369 SRSTPRSRSRSRTRTPSTPFTPSTTSSRASSRGKAKGGAKTTKTTKKCTTRKSR 1422
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +2
Query: 176 SVQPVPAGSPRESHCCTLRARDDYNSNVSPAVKLVTNY--TKNYQPAEDVLVPAKSTVVV 349
S P P+ +P S+ CT + +P+ T+Y T +Y P T
Sbjct: 25 SYTPTPSYTPTTSYTCTTSYTPTPSYTPTPSYTPTTSYTPTTSYTPTTSYTPTPSYTPTT 84
Query: 350 SYVP 361
SY P
Sbjct: 85 SYTP 88
>SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 175 QCTTRPGRISTRISLLYPPCPGRL 246
Q TT P RI+ I L+Y CP ++
Sbjct: 28 QLTTEPTRITPLIDLIYTNCPDKI 51
>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 111 NASENVL--IVCARWKEGHTGYMAVYNPSRQDLHANLTAVPSVPGTITIQTSRQPSNLSP 284
NA+++ L C EG +G + P R+ + T+ ++ G I + T +NL+P
Sbjct: 234 NAAQSSLPHTTCGAVTEGPSGEQSHIVPERRTTPGSHTSATTIYGKIPLSTPGVQANLAP 293
Query: 285 TI 290
+
Sbjct: 294 VV 295
>SB_29200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -2
Query: 177 LPCNRCDPLSILHK 136
L C RCDPL +LHK
Sbjct: 31 LSCVRCDPLLVLHK 44
>SB_45629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 308 AEDVLVPAKSTVVVSYVPIKHEKRE 382
AE +++PAK V +SY P+ H K+E
Sbjct: 59 AEIIIIPAKKYVRLSYNPV-HSKKE 82
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 166 VTWQCTTRPGRISTRISLLYPPCPGRLQFKRLASRQT 276
+ W +P I T + Y P G LQF++ + T
Sbjct: 1370 IEWDKPLQPNGIITEYIIYYGPAEGNLQFRKNVTSNT 1406
>SB_37753| Best HMM Match : zf-C2H2 (HMM E-Value=0.0023)
Length = 650
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 409 FYADDLFVFFTLLMFYRH 356
F AD L V+FT+ FYRH
Sbjct: 508 FQADVLVVWFTMRQFYRH 525
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,872
Number of Sequences: 59808
Number of extensions: 365650
Number of successful extensions: 1103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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