Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30954
(502 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ386730-1|ABD46888.1| 301|Homo sapiens cardiolipin synthase pr... 31 3.0
BC093815-1|AAH93815.1| 1135|Homo sapiens protocadherin 18 protein. 31 3.0
BC069010-1|AAH69010.1| 205|Homo sapiens CRLS1 protein protein. 31 3.0
AL137471-1|CAB70755.1| 709|Homo sapiens hypothetical protein pr... 31 3.0
AL035461-9|CAB55278.1| 301|Homo sapiens cardiolipin synthase 1 ... 31 3.0
AF241784-1|AAG44472.1| 301|Homo sapiens CAPTase-iso protein. 31 3.0
AB046782-1|BAB13388.1| 1136|Homo sapiens KIAA1562 protein protein. 31 3.0
AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein. 30 3.9
AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein. 30 3.9
AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein. 30 3.9
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 30 5.2
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 30 5.2
AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein. 30 5.2
AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein. 30 5.2
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 29 6.9
>DQ386730-1|ABD46888.1| 301|Homo sapiens cardiolipin synthase
protein.
Length = 301
Score = 30.7 bits (66), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 303 SRQRTCWSLLSPQSLCLMCL 362
S++R CW+LL P CL CL
Sbjct: 26 SKRRACWALLPPVPCCLGCL 45
>BC093815-1|AAH93815.1| 1135|Homo sapiens protocadherin 18 protein.
Length = 1135
Score = 30.7 bits (66), Expect = 3.0
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 186 PSRQDLHANLTAVPSVPGTITIQTSRQPS-NLSPTIRR 296
PSRQ ++T VP++ GT+ I++ + S + SPT+ R
Sbjct: 750 PSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 787
>BC069010-1|AAH69010.1| 205|Homo sapiens CRLS1 protein protein.
Length = 205
Score = 30.7 bits (66), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 303 SRQRTCWSLLSPQSLCLMCL 362
S++R CW+LL P CL CL
Sbjct: 26 SKRRACWALLPPVPCCLGCL 45
>AL137471-1|CAB70755.1| 709|Homo sapiens hypothetical protein
protein.
Length = 709
Score = 30.7 bits (66), Expect = 3.0
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 186 PSRQDLHANLTAVPSVPGTITIQTSRQPS-NLSPTIRR 296
PSRQ ++T VP++ GT+ I++ + S + SPT+ R
Sbjct: 324 PSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 361
>AL035461-9|CAB55278.1| 301|Homo sapiens cardiolipin synthase 1
protein.
Length = 301
Score = 30.7 bits (66), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 303 SRQRTCWSLLSPQSLCLMCL 362
S++R CW+LL P CL CL
Sbjct: 26 SKRRACWALLPPVPCCLGCL 45
>AF241784-1|AAG44472.1| 301|Homo sapiens CAPTase-iso protein.
Length = 301
Score = 30.7 bits (66), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 303 SRQRTCWSLLSPQSLCLMCL 362
S++R CW+LL P CL CL
Sbjct: 26 SKRRACWALLPPVPCCLGCL 45
>AB046782-1|BAB13388.1| 1136|Homo sapiens KIAA1562 protein protein.
Length = 1136
Score = 30.7 bits (66), Expect = 3.0
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 186 PSRQDLHANLTAVPSVPGTITIQTSRQPS-NLSPTIRR 296
PSRQ ++T VP++ GT+ I++ + S + SPT+ R
Sbjct: 751 PSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 788
>AJ291390-1|CAC19572.1| 901|Homo sapiens MUC3B mucin protein.
Length = 901
Score = 30.3 bits (65), Expect = 3.9
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 HTGYMAVYNPSRQDLHANLTAVPS-VPGTITIQTSRQPSNLSPTIRRTISR 308
+T + + P+ + +N + +P+ +PG TI + +PS+ PTI RT S+
Sbjct: 436 NTVFTSTRLPTSETWLSNNSVIPTPLPGVSTIPLTMKPSSSLPTILRTSSK 486
>AB038783-1|BAB12117.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 3.9
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 HTGYMAVYNPSRQDLHANLTAVPS-VPGTITIQTSRQPSNLSPTIRRTISR 308
+T + + P+ + +N + +P+ +PG TI + +PS+ PTI RT S+
Sbjct: 413 NTVFTSTRLPTSETWLSNNSVIPTPLPGVSTIPLTMKPSSSLPTILRTSSK 463
>AB038781-1|BAB12115.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 30.3 bits (65), Expect = 3.9
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 HTGYMAVYNPSRQDLHANLTAVPS-VPGTITIQTSRQPSNLSPTIRRTISR 308
+T + + P+ + +N + +P+ +PG TI + +PS+ PTI RT S+
Sbjct: 413 NTVFTSTRLPTSETWLSNNSVIPTPLPGVSTIPLTMKPSSSLPTILRTSSK 463
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 HTGYMAVYNPSRQDLHANLTAVP-SVPGTITIQTSRQPSNLSPTIRRTISR 308
+T + + P+ + +N + +P +PG TI + +PS+ PTI RT S+
Sbjct: 752 NTVFTSTRLPTSETWLSNSSVIPLPLPGVSTIPLTMKPSSSLPTILRTSSK 802
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 HTGYMAVYNPSRQDLHANLTAVP-SVPGTITIQTSRQPSNLSPTIRRTISR 308
+T + + P+ + +N + +P +PG TI + +PS+ PTI RT S+
Sbjct: 752 NTVFTSTRLPTSETWLSNSSVIPLPLPGVSTIPLTMKPSSSLPTILRTSSK 802
>AB038784-1|BAB12118.1| 877|Homo sapiens intestinal mucin protein.
Length = 877
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 HTGYMAVYNPSRQDLHANLTAVP-SVPGTITIQTSRQPSNLSPTIRRTISR 308
+T + + P+ + +N + +P +PG TI + +PS+ PTI RT S+
Sbjct: 412 NTVFTSTRLPTSETWLSNSSVIPLPLPGVSTIPLTMKPSSSLPTILRTSSK 462
>AB038782-1|BAB12116.1| 878|Homo sapiens intestinal mucin protein.
Length = 878
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 159 HTGYMAVYNPSRQDLHANLTAVP-SVPGTITIQTSRQPSNLSPTIRRTISR 308
+T + + P+ + +N + +P +PG TI + +PS+ PTI RT S+
Sbjct: 412 NTVFTSTRLPTSETWLSNSSVIPLPLPGVSTIPLTMKPSSSLPTILRTSSK 462
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 29.5 bits (63), Expect = 6.9
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 49 TSAATRRCRTVSTTWRPRPHVTPARTYSSFVQDGKRVTPVTWQCTTRPGRIST 207
T+ +T T STT P+ T A T S+ G +PVT T + ST
Sbjct: 426 TTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSGTTPSPVTTTSTASVSKTST 478
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,552,594
Number of Sequences: 237096
Number of extensions: 1726446
Number of successful extensions: 4341
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4335
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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