Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30954
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 29 2.5
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein. 28 4.4
U97189-7|AAK68257.3| 782|Caenorhabditis elegans Hypothetical pr... 27 5.8
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 27 5.8
AL032626-18|CAA21543.2| 458|Caenorhabditis elegans Hypothetical... 27 5.8
Z70310-7|CAA94364.1| 607|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 7.6
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 105 ARNASENVL-IVCARWKEGHTGYMAVYNPSRQDL-HANLTAVPSVPGTITIQTSRQ 266
ARN E +L +V + KE T R D A T+ PS PGT+T TS Q
Sbjct: 590 ARNEVEKLLKMVHSLEKENLTLTAQCKQLKRDDTPRAGTTSAPSAPGTLTRSTSAQ 645
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 137 LCKMERGSHRLHGSVQPVPAGSPRESHCCTLRARDDYNS 253
L K +RLH + QP+P G + T+ ARD++ +
Sbjct: 586 LSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKA 624
>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
F22B5.7 protein.
Length = 1415
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Frame = +3
Query: 108 RNASENVLIVCARWKEGH----TGYMAVYNPSRQDLHANLTAVPSVPGTITIQTSRQPSN 275
RNA+ NVL+ C +++ G MA + S + T V G +T + P
Sbjct: 825 RNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRTGVKPGSGVVTSPPTGGPKI 884
Query: 276 LSP-----TIRRTISRQRT 317
L P +RR SR RT
Sbjct: 885 LVPQQQGSVVRRPASRSRT 903
>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
Length = 1415
Score = 27.9 bits (59), Expect = 4.4
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Frame = +3
Query: 108 RNASENVLIVCARWKEGH----TGYMAVYNPSRQDLHANLTAVPSVPGTITIQTSRQPSN 275
RNA+ NVL+ C +++ G MA + S + T V G +T + P
Sbjct: 825 RNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRTGVKPGSGVVTSPPTGGPKI 884
Query: 276 LSP-----TIRRTISRQRT 317
L P +RR SR RT
Sbjct: 885 LVPQQQGSVVRRPASRSRT 903
>U97189-7|AAK68257.3| 782|Caenorhabditis elegans Hypothetical
protein C48B6.8 protein.
Length = 782
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 248 NSNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVVVSYV 358
N+ +SP LV +Y K+Y+ ++ P VVV Y+
Sbjct: 292 NAQMSPVALLVCSYNKSYENTITMMAP-DGKVVVGYL 327
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 137 LCKMERGSHRLHGSVQPVPAGSPRESHCCTLRARDDYNS 253
L K +RLH + QP+P G + T+ ARD++ +
Sbjct: 586 LSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKA 624
>AL032626-18|CAA21543.2| 458|Caenorhabditis elegans Hypothetical
protein Y37D8A.22 protein.
Length = 458
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 164 GVTLFPSCTNDEYVLAGVTCG 102
G+ LF S N + LAG+TCG
Sbjct: 274 GILLFASIPNPLFDLAGITCG 294
>Z70310-7|CAA94364.1| 607|Caenorhabditis elegans Hypothetical
protein R11A8.4 protein.
Length = 607
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 257 RLNCNRPGHGGYSSEIRVEILPGRVVHC 174
+ C R G +EIR E+L RV HC
Sbjct: 260 KCTCTRCGQKYDGNEIREEVLAMRVAHC 287
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
protein F54B3.1b protein.
Length = 3394
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 96 AAPARNASENVLIVCARWKEGHTG 167
A P+R+A E + IVC W E G
Sbjct: 904 AIPSRSAVETLAIVCEMWNEPEGG 927
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
protein F54B3.1a protein.
Length = 3396
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 96 AAPARNASENVLIVCARWKEGHTG 167
A P+R+A E + IVC W E G
Sbjct: 904 AIPSRSAVETLAIVCEMWNEPEGG 927
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,833,454
Number of Sequences: 27780
Number of extensions: 259545
Number of successful extensions: 832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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