Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30954
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 317 VLVPAKSTVVVSYVPIKHEKREKD 388
           +L+   ST VVS    KH +R +D
Sbjct: 13  LLLSIASTYVVSVAGYKHSRRHRD 36


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +2

Query: 242 DYNSNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVVVSYVPIKHE 373
           D N  V+ A K   NYT   +     +  +   + V Y P   +
Sbjct: 118 DGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQ 161


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = +2

Query: 149  ERGSHRLHGSVQPVPAGSPRESHCCTLRARDDYNSNVSPAVKLVTNYTKNYQ 304
            ER  H   G    VP   P ++ C TL ++    S +SP +         Y+
Sbjct: 1071 ERRQHTAEG----VPEQPPHDTTCTTLTSQTIRISWMSPPLSAANGVITGYK 1118


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 218 CCTLRARDDYNSNVSPA 268
           CC + +  DYN    PA
Sbjct: 145 CCGVHSLSDYNDKPIPA 161



 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 197 GSPRESHCCTL 229
           G+ RESHC T+
Sbjct: 72  GAIRESHCMTI 82


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 336 DLAGTSTSSAG 304
           DLAGTS  SAG
Sbjct: 337 DLAGTSQGSAG 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,102
Number of Sequences: 438
Number of extensions: 3299
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)