Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30954
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) simil... 30 0.76
At1g24267.1 68414.m03062 expressed protein 29 1.3
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 27 5.4
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 27 5.4
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 27 5.4
At1g09500.2 68414.m01065 cinnamyl-alcohol dehydrogenase family /... 27 5.4
At1g09500.1 68414.m01064 cinnamyl-alcohol dehydrogenase family /... 27 5.4
At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containi... 27 9.4
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 27 9.4
>At5g37190.1 68418.m04465 COP1-interacting protein 4 (CIP4) similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646; supporting cDNA
gi|13160645|dbj|AB036832.1|;
Length = 876
Score = 30.3 bits (65), Expect = 0.76
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 63 ASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYNPSRQDLHANLTAVPSVPGT 242
+ LS GE + R E L V + +GHTG + P Q + L V + GT
Sbjct: 220 SGLSMGEKQQTSVTERLLEEKNLTVNSELVDGHTGGVVKEVPDNQTIKEALEKVDDLTGT 279
Query: 243 I 245
I
Sbjct: 280 I 280
>At1g24267.1 68414.m03062 expressed protein
Length = 343
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 242 DYNSNVSPAVKLVTNYTKNYQPAEDVLVPAKSTVVVSYVPIKHE 373
D +S VS A+K+V K +PA+ P T++ ++HE
Sbjct: 29 DVSSFVSGALKMVFRQLKQEEPAKSASKPRNDTLMAQVNSLRHE 72
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 146 MERGSHRLHGSVQPVPAGSPRESHCCTLRARDDYNS-NVSPAVKLVTNYTKNYQPA 310
+++ H L+G + V P++ T+R + + NS S L+ YT+ + P+
Sbjct: 91 LQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPS 146
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 146 MERGSHRLHGSVQPVPAGSPRESHCCTLRARDDYNS-NVSPAVKLVTNYTKNYQPA 310
+++ H L+G + V P++ T+R + + NS S L+ YT+ + P+
Sbjct: 164 LQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPS 219
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 146 MERGSHRLHGSVQPVPAGSPRESHCCTLRARDDYNS-NVSPAVKLVTNYTKNYQPA 310
+++ H L+G + V P++ T+R + + NS S L+ YT+ + P+
Sbjct: 164 LQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPS 219
>At1g09500.2 68414.m01065 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 291
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 234 PGTITIQTSRQPSNLSPTIRRTISRQRTCWSLLSPQSLCL 353
P IT++T Q ++P + TI+ RTC + S + + L
Sbjct: 53 PVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVIL 92
>At1g09500.1 68414.m01064 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 325
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 234 PGTITIQTSRQPSNLSPTIRRTISRQRTCWSLLSPQSLCL 353
P IT++T Q ++P + TI+ RTC + S + + L
Sbjct: 87 PVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVIL 126
>At4g33990.1 68417.m04823 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 823
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 236 GHGGYSSEIRVEILPGRVVHCHVTGVTLFPSCTNDEYVLAGVTC 105
GHG + + E+L V H+T VTL +C++ V G C
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWC 574
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 278 VTNYTKNYQPAEDVLVPAKSTVVVSYVPIKHEK 376
V+NY N+ P +DV +P + + +V H +
Sbjct: 335 VSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSE 367
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,657
Number of Sequences: 28952
Number of extensions: 231933
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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