Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30952
         (799 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.53 
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   2.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 526 QQEVRDGDVVKGSYSF--HEADGSIRTVEYTAD 618
           ++   DG +V G Y    H+ DGS+R V YTAD
Sbjct: 208 EERTSDGFIV-GEYGVVSHD-DGSLRGVRYTAD 238


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 544 GDVVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKA 687
           GD+ KG+++  EA   I     T     G+NA     AP AA   ++A
Sbjct: 76  GDIEKGNFAEVEALKEINPNLKTIISIGGWNAGNAILAPIAASPELRA 123


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/37 (21%), Positives = 17/37 (45%)
 Frame = -2

Query: 312 WIVWGWS*RTMFWDETDSAGSSGVEKCGRQLGRPGTL 202
           W+   W+   + W+E++  G   +     +L +P  L
Sbjct: 55  WLSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVL 91


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/37 (21%), Positives = 17/37 (45%)
 Frame = -2

Query: 312 WIVWGWS*RTMFWDETDSAGSSGVEKCGRQLGRPGTL 202
           W+   W+   + W+E++  G   +     +L +P  L
Sbjct: 55  WLSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVL 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,599
Number of Sequences: 336
Number of extensions: 2527
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)