Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30952
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171...    30   1.9  
11_06_0494 + 24316007-24316365,24317307-24317706                       29   5.7  
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475...    29   5.7  
01_01_0137 + 1249081-1249341,1249500-1250237                           29   5.7  
11_01_0477 - 3688357-3690042                                           28   7.5  
02_02_0369 - 9505330-9505652,9507262-9507532,9507649-9507690,950...    28   7.5  
01_05_0624 + 23772613-23774671,23774737-23775596                       28   9.9  

>04_01_0148 +
           1710369-1710531,1711821-1712279,1712769-1712915,
           1713004-1714170,1714378-1714430
          Length = 662

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 629 PLWSSAVYSTVLIEPSASWKEYEPFTTSPSRTSCWDLLSPGDHQLLSSCT 480
           P +S + YS+       + +EY+P   +P + SC  +  P    LLS+C+
Sbjct: 38  PTYSGSGYSSA--SDGGNQEEYDPNKENPCKRSCGSMSIPFPFALLSACS 85


>11_06_0494 + 24316007-24316365,24317307-24317706
          Length = 252

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 533 SCWDLLSPGDHQLLSSCTR 477
           SCWDL    D QLL+ C R
Sbjct: 212 SCWDLCVDDDAQLLAKCAR 230


>06_03_1282 -
           28946363-28946533,28947234-28947272,28947399-28947566,
           28947605-28947697,28948135-28948215,28948409-28948499,
           28948657-28948728,28948803-28948903,28949283-28949381,
           28949631-28949954
          Length = 412

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 27  IVVLCALV-AVSKAGLLAAPVHYSPAEAVSSQSIVRHDQPQ 146
           IV+L A V AV     L  P HY+P   VSS S      P+
Sbjct: 15  IVILIAFVCAVGIGAYLYTPQHYTPCYLVSSNSCSSRPPPE 55


>01_01_0137 + 1249081-1249341,1249500-1250237
          Length = 332

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 140 ASAPRCQARCCYPCSLPRGPCSVPGRPSC-LPHFST 244
           A+A   +A  C PCS P   C   G P+  L HF+T
Sbjct: 144 AAAEHQRACPCAPCSCPDPGCGFRGSPAALLGHFAT 179


>11_01_0477 - 3688357-3690042
          Length = 561

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = +2

Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSCLPHFSTPLLPAESVSSQNIVRH 292
           AP   +R CY CS+P  P   P   S        LL   S S Q    H
Sbjct: 62  APPAASRVCYTCSVPVDPALGPPYMSVAAAHGDSLLVLVSFSYQEGYEH 110


>02_02_0369 -
           9505330-9505652,9507262-9507532,9507649-9507690,
           9508416-9508458,9508853-9508860
          Length = 228

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 113 FPKHCAP*PASAPRCQARCCYPCSLPRGPCSVPGRPSCLPHFSTPLLPAESV 268
           F +H    P   PR +        +P G   VPG P  +P    P+LPA  +
Sbjct: 70  FNQHLLSFPGGVPRPRLPILPTPGMPLGVPQVPGAP-LMPGVRPPILPAPGI 120


>01_05_0624 + 23772613-23774671,23774737-23775596
          Length = 972

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 134 MAHNALGRNGFSGRVVHGSSQKSSFRHRDQSAQYYD 27
           + H  L R GF GRV H     S+ +  D +++ YD
Sbjct: 159 LTHLNLARMGFYGRVPHQLGNLSNLQFLDITSEIYD 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,787,770
Number of Sequences: 37544
Number of extensions: 293248
Number of successful extensions: 1040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)