Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30952
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.62 
SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)                    31   1.1  
SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 556  KGSYSFHEADGSIRTVEYTADDHSGFNAVVH 648
            KGSY  H+ DG  RT+EY +    G+    H
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAH 1772


>SB_27063| Best HMM Match : GATA (HMM E-Value=2e-18)
          Length = 563

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 149 PRCQARCCYPCSLPRGPCS-VPGRPSCLPHFSTPLLPAES 265
           P+ QA     CS    P + VPG P C PHF TP+   ES
Sbjct: 226 PQSQASPPGSCSRVFLPTARVPGSPVCRPHFHTPIQWIES 265


>SB_48810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/40 (47%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 68  TSGCSRALLSR*SRFFPK-HCAP*PASAPRCQARCCYPCS 184
           TS  SRA L     F P  HCA    S PRC AR   P S
Sbjct: 18  TSPLSRAALRAYKAFHPVLHCALYKCSTPRCIARYTSPPS 57


>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2147

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 164  RCCYPCSLPRGPCSVPGRPSCLPHFSTPL-LPAESVSSQNIVRHDQPQTI 310
            R   PC +  G CS PG  +C  H +  L +   +V S  +V  D  +T+
Sbjct: 1500 RYTIPCFVAPGRCSAPGTLTCSIHNTLYLDVRCPTVQSSVVVMSDNGRTV 1549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,928
Number of Sequences: 59808
Number of extensions: 321737
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)