Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30952
(799 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY960854-1|AAX59055.1| 579|Homo sapiens keratinocyte proline-ri... 31 3.6
AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein. 31 3.6
AL353779-4|CAI20978.1| 579|Homo sapiens keratinocyte proline-ri... 31 3.6
AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain pr... 31 3.6
AB067494-1|BAB67800.1| 1737|Homo sapiens KIAA1907 protein protein. 31 3.6
DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein. 31 6.4
AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein. 31 6.4
AY396741-1|AAR91619.1| 2850|Homo sapiens hornerin precursor prot... 31 6.4
AL589986-3|CAH70026.1| 2850|Homo sapiens hornerin protein. 31 6.4
AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein. 31 6.4
U79266-1|AAB50210.1| 285|Homo sapiens unknown protein. 30 8.4
AK074268-1|BAB85034.1| 274|Homo sapiens protein ( Homo sapiens ... 30 8.4
>AY960854-1|AAX59055.1| 579|Homo sapiens keratinocyte proline-rich
protein protein.
Length = 579
Score = 31.5 bits (68), Expect = 3.6
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Frame = +2
Query: 77 CSRALLS-R*SRFFPKHCAP*PASAP----RCQARCCYPCSLPRGP-CSVPGRPSCLPHF 238
CS + L R S FP +C P S P RC R CS RGP C + C P
Sbjct: 278 CSSSYLPLRPSEGFPNYCTPPRRSEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQ 337
Query: 239 STP 247
P
Sbjct: 338 VPP 340
>AL354836-5|CAC22310.1| 3690|Homo sapiens laminin, alpha 5 protein.
Length = 3690
Score = 31.5 bits (68), Expect = 3.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 125 CAP*PASAPRCQARCCYPC-SLPRGPCSVPGRPSCLPHFSTP 247
CAP P CQ C P +LP G C GR C P F+ P
Sbjct: 574 CAPGYFHFPLCQLCGCSPAGTLPEG-CDEAGRCLCQPEFAGP 614
>AL353779-4|CAI20978.1| 579|Homo sapiens keratinocyte proline-rich
protein protein.
Length = 579
Score = 31.5 bits (68), Expect = 3.6
Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Frame = +2
Query: 77 CSRALLS-R*SRFFPKHCAP*PASAP----RCQARCCYPCSLPRGP-CSVPGRPSCLPHF 238
CS + L R S FP +C P S P RC R CS RGP C + C P
Sbjct: 278 CSSSYLPLRPSEGFPNYCTPPRRSEPIYNSRCPRRPISSCSQRRGPKCRIEISSPCCPRQ 337
Query: 239 STP 247
P
Sbjct: 338 VPP 340
>AF443072-1|AAM12527.1| 3695|Homo sapiens laminin alpha5 chain
precursor protein.
Length = 3695
Score = 31.5 bits (68), Expect = 3.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 125 CAP*PASAPRCQARCCYPC-SLPRGPCSVPGRPSCLPHFSTP 247
CAP P CQ C P +LP G C GR C P F+ P
Sbjct: 574 CAPGYFHFPLCQLCGCSPAGTLPEG-CDEAGRCLCQPEFAGP 614
>AB067494-1|BAB67800.1| 1737|Homo sapiens KIAA1907 protein protein.
Length = 1737
Score = 31.5 bits (68), Expect = 3.6
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 125 CAP*PASAPRCQARCCYPC-SLPRGPCSVPGRPSCLPHFSTP 247
CAP P CQ C P +LP G C GR C P F+ P
Sbjct: 377 CAPGYFHFPLCQLCGCSPAGTLPEG-CDEAGRCLCQPEFAGP 417
>DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein.
Length = 2391
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 116 GRNGFSGRVVHGSS--QKSSF-RHRDQSAQYYDFGEH 15
G + SG HGSS Q S F +HR S QY FG+H
Sbjct: 851 GSSQSSGYGQHGSSSGQTSGFGQHRSSSGQYSGFGQH 887
>AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein.
Length = 2391
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 116 GRNGFSGRVVHGSS--QKSSF-RHRDQSAQYYDFGEH 15
G + SG HGSS Q S F +HR S QY FG+H
Sbjct: 851 GSSQSSGYGQHGSSSGQTSGFGQHRSSSGQYSGFGQH 887
>AY396741-1|AAR91619.1| 2850|Homo sapiens hornerin precursor protein.
Length = 2850
Score = 30.7 bits (66), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 116 GRNGFSGRVVHGSSQKSSFRHRDQSAQYYDFGEH 15
GR+ SGR GS Q S F H+ S Q + +H
Sbjct: 914 GRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQH 947
>AL589986-3|CAH70026.1| 2850|Homo sapiens hornerin protein.
Length = 2850
Score = 30.7 bits (66), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 116 GRNGFSGRVVHGSSQKSSFRHRDQSAQYYDFGEH 15
GR+ SGR GS Q S F H+ S Q + +H
Sbjct: 914 GRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQH 947
>AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein.
Length = 2391
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -3
Query: 116 GRNGFSGRVVHGSS--QKSSF-RHRDQSAQYYDFGEH 15
G + SG HGSS Q S F +HR S QY FG+H
Sbjct: 851 GSSQSSGYGQHGSSSGQTSGFGQHRSSSGQYSGFGQH 887
>U79266-1|AAB50210.1| 285|Homo sapiens unknown protein.
Length = 285
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +2
Query: 104 SRFFPKHCAP*PASAPRCQARCCYP-CSLPRGPC 202
SR FP+HC P A P P C LP G C
Sbjct: 24 SRAFPQHCRPRDAERPPSPRSPLMPGCELPVGTC 57
>AK074268-1|BAB85034.1| 274|Homo sapiens protein ( Homo sapiens
cDNA FLJ23688 fis, clone HEP10127. ).
Length = 274
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 125 CAP*PASAPRCQ--ARCCYPCSLPRGPCSVPGRPSCLPHFSTPLLPAES 265
C P A RC+ +RC P S PR P S P+ + P LP S
Sbjct: 214 CCPRRHRASRCRPRSRCPLPPSRPRSPASPAHSPTPTSALALPHLPVAS 262
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,519,829
Number of Sequences: 237096
Number of extensions: 1604496
Number of successful extensions: 5611
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5580
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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