Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30952
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical ... 29 5.1
AC006649-3|AAF39863.2| 260|Caenorhabditis elegans Hypothetical ... 29 5.1
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 28 6.7
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 28 6.7
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical ... 28 6.7
AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical... 24 7.6
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 28 8.9
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 28 8.9
>AC006696-4|AAF39985.1| 215|Caenorhabditis elegans Hypothetical
protein W08E12.6 protein.
Length = 215
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = +2
Query: 131 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSCL-PHFSTPLL-PAESVSSQNIVRHDQP 301
P P P C C P P P V G P C P P PA + S+ IV P
Sbjct: 87 PPPCFGPACPPPCFGPACAPPAPIIVNGPPPCFGPACPPPCFGPACAPSAPIIVNGPPP 145
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = +2
Query: 131 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSC 226
P P P C C P +P P V G P C
Sbjct: 59 PPPCFGPACPPPCFGPACVPLAPIIVNGPPPC 90
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +2
Query: 131 P*PASAPRCQARCCYPCSLPRGPCSVPGRPSC 226
P P P C C P P P V G P C
Sbjct: 115 PPPCFGPACPPPCFGPACAPSAPIIVNGPPPC 146
>AC006649-3|AAF39863.2| 260|Caenorhabditis elegans Hypothetical
protein H01M10.2 protein.
Length = 260
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 221 SCLPHFSTPLLPAESVSSQNIVRHDQP 301
SC P FS PL PA + NI+ + P
Sbjct: 15 SCTPSFSAPLTPAVAPQPINIISNSPP 41
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSC 226
AP CQ +C C+LP P + SC
Sbjct: 270 APVCQQQCAPQCTLPSAPACQQCQTSC 296
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSC 226
AP CQ +C C+LP P + SC
Sbjct: 271 APVCQQQCAPQCTLPSAPACQQCQTSC 297
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSC 226
AP CQ +C C+LP P + SC
Sbjct: 186 APVCQQQCAPQCTLPSAPACQQCQTSC 212
>AC006809-3|AAY86286.1| 558|Caenorhabditis elegans Hypothetical
protein Y5H2A.4 protein.
Length = 558
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSC 226
AP CQ +C C+LP P + SC
Sbjct: 410 APVCQQQCAPQCTLPSAPACQQCQTSC 436
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSC 226
AP CQ +C C+LP P + SC
Sbjct: 309 APVCQQQCAPQCTLPSAPVCQQCQTSC 335
>AL117195-28|CAB55014.1| 458|Caenorhabditis elegans Hypothetical
protein Y57A10A.11 protein.
Length = 458
Score = 23.8 bits (49), Expect(2) = 7.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 167 CCYPCSLPRGPCSVPGRP 220
CC P P GP PGRP
Sbjct: 258 CCLPG--PAGPPGAPGRP 273
Score = 22.6 bits (46), Expect(2) = 7.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +2
Query: 197 PCSVPGRPSCLPHFSTPLLPAESVSSQ 277
PC+ +P C+P PL PA Q
Sbjct: 295 PCNPVTKPPCVPCPQGPLGPAGPAGPQ 321
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSC 226
AP CQ +C C+LP P + SC
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSC 212
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 146 APRCQARCCYPCSLPRGPCSVPGRPSC 226
AP CQ +C C+LP P + SC
Sbjct: 186 APVCQQQCTPQCTLPSAPACQQCQTSC 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,855,530
Number of Sequences: 27780
Number of extensions: 231130
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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