Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30952
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    27   0.15 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    26   0.47 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.3  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 140 ASAPRCQARCCYPCSLPRGPCSVPGRPSCLPH 235
           A   +C    C  CS  +  CS    P CLPH
Sbjct: 80  AEGMQCSCNKCIGCSAEKFECSKTSNP-CLPH 110


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 550 VVKGSYSFHEADGSIRTVEYTADDHSGFNAVVHNTAPTAAPTHIKAVPALQY 705
           V +GS S+   DG   ++ Y AD+ +GF  V  +  PTA P   +   AL++
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVADE-NGFQ-VQGSHIPTAPPIPPEIQRALEW 119


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 470 PKYEYNYSVADGHPATTSP 526
           P    ++S ADGHP    P
Sbjct: 58  PPLNIDWSTADGHPVNDVP 76


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 470 PKYEYNYSVADGHPATTSP 526
           P    ++S ADGHP    P
Sbjct: 58  PPLNIDWSTADGHPVNDVP 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,384
Number of Sequences: 438
Number of extensions: 2818
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)