Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30952
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote...    31   0.89 
At1g62780.1 68414.m07086 expressed protein                             29   3.6  
At4g22890.3 68417.m03307 expressed protein                             28   8.3  
At4g22890.2 68417.m03306 expressed protein                             28   8.3  
At4g22890.1 68417.m03305 expressed protein                             28   8.3  
At1g28340.1 68414.m03481 leucine-rich repeat family protein cont...    28   8.3  

>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 654

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 179 CSLPRGPCSVPGRPSCL-PHFSTPLLP 256
           C LP  PC+    P  L PH STP LP
Sbjct: 239 CGLPLQPCATSSPPPSLTPHISTPPLP 265


>At1g62780.1 68414.m07086 expressed protein
          Length = 237

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 135 HGAQCFGKKRLQRESSAREQPEVQLSTPRPKRTVLR 28
           H A+   K+RL+R+S ARE  + QL   + +R  LR
Sbjct: 45  HIARLEFKRRLERDSEAREAFQKQLREEKERRQALR 80


>At4g22890.3 68417.m03307 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 626 LWSSAVYSTVLIEPSASWKEYEPFTTSPSRTSCWDLLSPG 507
           L S  ++S V  +PS+S   + P   SPS  + W  LSPG
Sbjct: 9   LTSPRLFSAVSRKPSSS---FSPSPPSPSSRTQWTQLSPG 45


>At4g22890.2 68417.m03306 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 626 LWSSAVYSTVLIEPSASWKEYEPFTTSPSRTSCWDLLSPG 507
           L S  ++S V  +PS+S   + P   SPS  + W  LSPG
Sbjct: 9   LTSPRLFSAVSRKPSSS---FSPSPPSPSSRTQWTQLSPG 45


>At4g22890.1 68417.m03305 expressed protein
          Length = 324

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 626 LWSSAVYSTVLIEPSASWKEYEPFTTSPSRTSCWDLLSPG 507
           L S  ++S V  +PS+S   + P   SPS  + W  LSPG
Sbjct: 9   LTSPRLFSAVSRKPSSS---FSPSPPSPSSRTQWTQLSPG 45


>At1g28340.1 68414.m03481 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to
           receptor-like protein kinases
          Length = 626

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 194 GPCSVPGRPSCLPHFST 244
           G C +PG P+C PH S+
Sbjct: 530 GLCGIPGLPACGPHLSS 546


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,150,396
Number of Sequences: 28952
Number of extensions: 215249
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)