Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30951
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 90 4e-19
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz... 45 2e-05
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 31 0.22
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 31 0.29
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 30 0.38
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 29 1.2
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 29 1.2
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 28 2.0
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.5
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 26 8.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 8.1
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 89.8 bits (213), Expect = 4e-19
Identities = 41/58 (70%), Positives = 47/58 (81%)
Frame = +1
Query: 508 EPAALIFSSCFVANDATLSTLAKILPDCIVYSDAGNHASMIQGIRNSRAPKHIFRHND 681
+PAAL+F SC+VANDATLSTL + LP+CI SD NHASMI GIRNSR K IF+HND
Sbjct: 234 KPAALVFGSCYVANDATLSTLGRKLPNCIFLSDEMNHASMINGIRNSRCEKIIFKHND 291
Score = 82.2 bits (194), Expect = 9e-17
Identities = 39/85 (45%), Positives = 54/85 (63%)
Frame = +2
Query: 254 HRVFRKVSRLAADGVYPKALEGPENRRVTVWCANDYLGTSRHPTVQDAAVNAIKSYGTGA 433
+R F ++RLA + YP A N RV VWC+NDYL H +++A I++YG GA
Sbjct: 151 YRYFNNINRLAKE--YPLAHLADPNTRVEVWCSNDYLNMGGHKKIREAMHQCIETYGGGA 208
Query: 434 GGTRNIAGNSQMTEKLEGEIAKLHK 508
GGTRNIAG++Q +LE +A LH+
Sbjct: 209 GGTRNIAGHNQHAVRLEKSLADLHQ 233
>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +1
Query: 508 EPAALIFSSCFVANDATLSTLAKILPDCIVYSDAGNHASMIQGIRNSRAPKHIFRHND 681
+PAAL+FS F N STL + P ++ SD NH S+ G R S A +++HND
Sbjct: 248 KPAALVFSQGFSTNATVFSTL--MCPGSLIISDELNHTSIRFGARLSGANIRVYKHND 303
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 102 NDETKCPFIQQNSIISEAPKEMTEDIAEPATPYHYENFFHDQINAKKRDYSIA 260
+DE C F+ + + + +D+ E + YHYE F Q+++ K S+A
Sbjct: 260 DDENHCEFVFLRNFLM---RTHLQDLIETTSYYHYEKFRFKQLSSLKEQSSLA 309
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 30.7 bits (66), Expect = 0.29
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +1
Query: 541 VANDATLSTLAKILPDCIVYSDAGNHASMIQGIRNSRAPKHIFRHNDPNHYGSLLGRLXQ 720
V D +L +I+ I Y+ NH I I+ HIF N NHYG +
Sbjct: 274 VHTDRSLFFSGQIIDFTICYTH--NHHRRIHNIKARLLETHIFHPNTQNHYGGYCMNQAE 331
Query: 721 RCTKASC 741
T ASC
Sbjct: 332 E-TFASC 337
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 349 TPDSYSTIFRPLQGFRIYSISSQTRHLSKNAM-E*SLFLALIWSWKKFS 206
TP+++ +++R L F SS TR LSKN + A +W W + S
Sbjct: 226 TPNAFISLYRLLDRFHGLRSSSVTRSLSKNIKGDGDAVRAQLWLWNRQS 274
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 72 IISRGFRSLGNDETKCPFIQQNSIISEAPKEMTEDI 179
I+SRG S+ + E+K I N + SEAP + ++
Sbjct: 736 IVSRGLWSIDSKESKNMHISSNVVASEAPDALAANL 771
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 113 GFVISQRTKSTRYNRAIISVLLHQGR 36
GF++ T STRYN A+I V L Q R
Sbjct: 335 GFLVG--TSSTRYNEALIDVSLRQSR 358
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 188 RFRDVLGHFLRSFRNDRVLLNEGAFG 111
+F + G+ ++ NDRVL EG FG
Sbjct: 464 KFYKIWGNEMQEIHNDRVLYREGIFG 489
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 3.5
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = -3
Query: 469 HLGVS-SNIPCTTCSCSIGFDSVDSSILHSWVTGRP*VVIGTPDSY--STIFRPLQGFR- 302
HL ++ S + C+ CS S + +LHS R V+ G S+ S I+R G
Sbjct: 645 HLDLANSTVTCSECSMEYNSTSEEDILLHSRFHSR--VLGGVTVSFQCSPIYRVNYGLSS 702
Query: 301 --IYSISSQTRHLSKNAME*SL 242
IYSI+S++ + + E +L
Sbjct: 703 DCIYSINSESSLIDQRKAEEAL 724
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 8.1
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +1
Query: 523 IFSSCFVANDATLSTLAKILPDC-IVYSDAGNHASM--IQGIRNSRAPKHIFRHNDPNHY 693
IF S T++ ++ P+ IVY+D ++G+ A K + N P+HY
Sbjct: 50 IFCSSMKRCRETIAPYLELKPEVPIVYTDLIRERVYGDLEGMNVVEAKK-LLNANHPDHY 108
Query: 694 GSLLGRLXQRCTK 732
G L L R K
Sbjct: 109 GEGLSHLTSRLLK 121
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 11 PSVREKLWCDPDEAVRKLLPDYISWIS 91
P + + +CD + RKLL D++S ++
Sbjct: 1604 PKIIQDYYCDMSDLQRKLLNDFVSQLN 1630
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,889,323
Number of Sequences: 5004
Number of extensions: 83820
Number of successful extensions: 234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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