Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30951
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   6e-23
SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07)         43   3e-04
SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)         37   0.019
SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)                 37   0.019
SB_45498| Best HMM Match : Herpes_BLRF2 (HMM E-Value=6.1)              29   6.6  
SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)                 29   6.6  
SB_14571| Best HMM Match : LTXXQ (HMM E-Value=6.6)                     29   6.6  
SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_5732| Best HMM Match : LTXXQ (HMM E-Value=6.6)                      29   6.6  
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)                       29   6.6  
SB_22587| Best HMM Match : LTXXQ (HMM E-Value=6.6)                     29   6.6  
SB_15162| Best HMM Match : LTXXQ (HMM E-Value=6.6)                     29   6.6  
SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)                   29   6.6  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_43339| Best HMM Match : SAC3_GANP (HMM E-Value=1.8e-09)             28   8.7  

>SB_11194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score =  105 bits (251), Expect = 6e-23
 Identities = 47/64 (73%), Positives = 53/64 (82%)
 Frame = +1

Query: 514 AALIFSSCFVANDATLSTLAKILPDCIVYSDAGNHASMIQGIRNSRAPKHIFRHNDPNHY 693
           AAL+F+SC+VAND TL TL K LP C+++SDAGNHASMIQGIRNS A K IFRHNDP H 
Sbjct: 285 AALLFTSCYVANDTTLYTLGKHLPGCLIFSDAGNHASMIQGIRNSGAKKFIFRHNDPEHL 344

Query: 694 GSLL 705
           G LL
Sbjct: 345 GKLL 348



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 3/157 (1%)
 Frame = +2

Query: 398 AVNAIKSYGTGAGGTRNIAGNSQMTEKLEGEIAKLHKSXXXXXXXXXXXXXXXXXXH*QK 577
           ++  I  +G GAGGTRNI+G S   E+LE  +A+LH+                      K
Sbjct: 246 SLETIDVHGVGAGGTRNISGTSSYHEQLEKVLAQLHQKEAALLFTSCYVANDTTLYTLGK 305

Query: 578 Y---CLIA*FTRMQEIMLL*YKESGTAEPLSISSGXXXXXXXXVYWADSXKGVPKLVVFE 748
           +   CLI         M+   + SG A+               +  AD     PK+V FE
Sbjct: 306 HLPGCLIFSDAGNHASMIQGIRNSG-AKKFIFRHNDPEHLGKLLAAAD--PAAPKIVAFE 362

Query: 749 TVHSIVGAIWSFRRNVQYRHMIFGSFNFCLMKCHAVG 859
           TVHS+ G I   ++     H  +G+  F + + HAVG
Sbjct: 363 TVHSMTGDISPIKQLCDVAHK-YGALTF-VDEVHAVG 397


>SB_29250| Best HMM Match : Aminotran_1_2 (HMM E-Value=7.4e-07)
          Length = 252

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +1

Query: 517 ALIFSSCFVANDATLSTLAKILPDCIVYSDAGNHASMIQGIRNSRAPKHIFRHND 681
           A++++ C+ AN     +L  +  +  V+SD  NHASMI GIR  RA K  ++H D
Sbjct: 49  AILYACCYDANTGLFESL--LTAEDAVFSDELNHASMIDGIRLCRAKKFKYKHID 101



 Score = 32.7 bits (71), Expect = 0.40
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 386 VQDAAVNAIKSYGTGAGGTRNIAGNSQMTEKLEGEIAKLH 505
           V +AA  A+  YG G    R I G   + + LE +I+K H
Sbjct: 5   VVNAAKEALMKYGNGLSSVRFICGTQDIHKTLEAKISKFH 44


>SB_33803| Best HMM Match : Aminotran_1_2 (HMM E-Value=2.6e-26)
          Length = 391

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 514 AALIFSSCFVANDATLSTLAKILPDCIVYSDAGNHASMIQGIRNSRAPKHIFRHND 681
           +A++F   F  N   +  L  +    ++ SD  NH+S++ G R S A   +F+HND
Sbjct: 164 SAMVFGMGFATNSTNIPVL--VSKGDLIISDELNHSSLVLGARLSGATIKVFKHND 217


>SB_33262| Best HMM Match : DOMON (HMM E-Value=2.7e-28)
          Length = 595

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 514 AALIFSSCFVANDATLSTLAKILPDCIVYSDAGNHASMIQGIRNSRAPKHIFRHND 681
           +A++F   F  N   +  L  +    ++ SD  NH+S++ G R S A   +F+HND
Sbjct: 21  SAMVFGMGFATNSTNIPVL--VSKGDLIISDELNHSSLVLGARLSGATIKVFKHND 74


>SB_45498| Best HMM Match : Herpes_BLRF2 (HMM E-Value=6.1)
          Length = 325

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_23813| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
          Length = 1283

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 35  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 68


>SB_14571| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 244

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_10514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 184 NFLELMLGQIANYCPIISRS--TLVKNSTSLEFIWQ 217


>SB_5732| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 369

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1586

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_43706| Best HMM Match : RVP (HMM E-Value=1.4)
          Length = 577

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_22587| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 204

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_15162| Best HMM Match : LTXXQ (HMM E-Value=6.6)
          Length = 401

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISR--NTLVKNSTSLEFIWQ 114


>SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)
          Length = 619

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NYGATLMKQYGNYCPIISRGFRSLGNDETKCPFIQQ 134
           N+   ++ Q  NYCPIISR   +L  + T   FI Q
Sbjct: 81  NFLELMLGQIANYCPIISRS--TLVKNSTSLEFIWQ 114


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 496  CN-FSFKLLSHLGVSSNIPCTTCSCSIGFDSVDSSILHSW 380
            CN FS  L+  L +S    CT C+C  G     SS+   W
Sbjct: 7239 CNRFSVLLICDLFLSETSTCTDCTCENGGTCGVSSVYGHW 7278


>SB_43339| Best HMM Match : SAC3_GANP (HMM E-Value=1.8e-09)
          Length = 657

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 847 ALHQTKVKAPKNHVPILHISSKGPYSTHYGMNS 749
           A+H   +  P  H P+L    KG Y+  Y M +
Sbjct: 578 AVHNGPLPTPPTHEPVLSFDEKGNYTWSYHMTT 610


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,605,529
Number of Sequences: 59808
Number of extensions: 625404
Number of successful extensions: 1565
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)